Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2256 ATGGCGATGGAGAATCCAGAGAAGGACGAGTTAAAGAAGTTGGAGTACCTTTCTCTCGTTTCGAAGGTTTGCACTGAGTTGGAGTCCCACACTGGAACCGGTGACAAGGTCCTCGCTGAGTTCATCACCGACTTGGGTCAATCCTCCGAATCCGTCGAAGAATTCGATTCCAAATTGAAGGAGAACGGTGCTGAGATGCCCGATTACTTCGTTCGCACTCTCTTAACCATAATCCACGCCATTCTCCCTCCCAAAAAGGGTTCCAGTAACAATAAGGGTGGTGGTTTGAAGCAAAACGACGGCGTTTCGAAGACCAAGTTTAAGGCACTGGCTATTGCTGATGATAGGGATAGGGTTAAGGAGCTGCAGAAGGAGATTGAAGATGAAGCAAGAGACAAGCACGGTGGTGGTGACGAGAATGGTGAAGATGGGTTCAGAGAAAGAGATAAAGGAAGAGATAGAAGAGAAAGAAGGGACAGGTATGACAAAAATGATAGAGATGAACGGCATAGGGATAGGGATAGAGATAGAGATAGACATAGAGACAGAGACAGAGACAGAGATAATGGAGATTGTGATGATGATGATGATGATGGAAGAAGGGATTATAGGAGAAAGGGGAGGGATAGAGAGAGTGATAGGTATGATAGGGATAATAGATATCAGAGGGGTAGGAGAGACGGGTATGAAAAAAATGGTCGAAATGGTGAGGAAGATGGTGGTGAGAGGAGAGGAAGGAGGGATTCAAGGCGTGATGGTGGTGGTGGTGGTGGTGAGATTGAGTTGTATAAGGTTTATAAAGGGAGGGTTTCAAGGGTGATGGACACGGGGTGCTTTGTGCAGTTGGAAGATTTTAGGGGAAAGGAAGGGTTGGTGCACATCTCGCAGATTGCGACGCGGAGGATTAGTAATGCCAAGGATGTGGTGAAGCGGGATCAGGAGGTTTTCGTGAAGGTGATATCGATGACAGGTCAGAAGTTGAGCCTGTCAATGAGGGATGTTGATCAGCATACCGGGAAGGATCTTGTTCCCTTGAAGAAGAGCTCAGAGGATGAAGGGTTTAGGATGAATCCGCAGGATTCGAAGGATGGGCCAGTTGCCAGGACGGGTCTCTCTGGGATCAGGATTGTGGAGGAGGATGGCATGGGTTCTTCTTCGAGAAGGCCTTTAAAGAGGATGAGCTCTCCGGAGAGGTGGGAGGCGAAGCAGTTGATTGCCTCGGGGGTTTTGAGTGTTTCAGATTATCCTACTTATGATGAGGAGGGAGATGGGCTGCTCTACCAGGAGGAGGGTGCCGAGGAGGAGCTTGAGATCGAGATGAATGAGGATGAGCCTGCATTCTTGCAAGGGCAGAGCAGGTATTCGATGGATATGTCACCTGTTAAGATTTTTAAGAATCCAGAAGGTTCTTTGGGTCGTGCTGCTGCACTCCAATCTGCACTTATAAAGGAGCGTAGAGAAGTACGTGAACAGCAGCAGCGCACCATGCTGGACTCAATTCCAAAGGATCTCAATCGTCCTTGGGAAGACCCTATGCCAGAGTCTGGTGAAAGGCATCTTGCCCAGGAGCTTAGGGGTGTTGGCTTATCAGCCTACGATATGCCAGAGTGGAAGAAGGATGCTTATGGGAAGACCATTACTTTTGGGCAAAGGTCAAAGCTTTCTATTCAGGAACAGAGGCAGAGTCTACCAATTTACAAGTTGAAAAAAGAATTGATTCAGGCTGTCCATGATAATCAGGTGTTGGTGGTAATTGGTGAAACAGGTTCAGGTAAAACTACTCAGGTCACGCAGTATCTTGCTGAAGCAGGCTACACCACAAAAGGTAAAATTGGATGCACTCAACCACGTAGGGTGGCTGCAATGTCGGTTGCAAAGAGAGTGGCAGAAGAGTTTGGTTGCCGGCTGGGAGAGGAAGTTGGTTATGCCATTCGGTTTGAGGATTGCACTGGACCAGATACCGTAATCAAGTACATGACAGATGGTATGCTTCTTAGGGAAATCCTGGTTGATGAGAATCTGTCACAGTATTCTGTTGTAATGCTTGATGAAGCTCATGAAAGGACTATTCATACTGATGTTCTTTTTGGGCTCCTGAAGCAGCTAGTGAAGCGTAGACCTGAGTTGCGATTGATTGTCACATCTGCTACTCTGGATGCTGAGAAGTTCTCAGGATATTTCTTTAACTGTAACATCTTTACAATTCCTGGGAGAACTTTCCCTGTGGAGATTCTCTATACTAAGCAGCCAGAAAGTGATTACTTAGATGCAGCTTTAATCACTGTCCTACAGATCCACTTGACAGAACCTGAAGGGGACATTCTTCTCTTCCTGACTGGTCAGGAGGAGATTGATTTTGCTTGCCAATCTCTCTACGAGAGGATGAAGGGACTAGGTAAGAATGTTCCAGAACTGATCATATTGCCTGTATATAGTGCCCTTCCTAGTGAGATGCAATCTAGGATATTTGACCCTGCTCCTCCTGGGAAAAGGAAAGTGGTTGTGGCTACCAACATTGCTGAGGCTTCTTTGACTATTGATGGGATATTTTATGTTATTGATCCTGGGTTTGCTAAGCAAAATGTTTATAACCCAAAGCAAGGTCTTGATTCTTTGGTTATAACTCCAATTTCACAAGCTTCAGCCAAACAAAGAGCTGGGCGTGCAGGGCGTACTGGTCCTGGGAAGTGCTATCGCCTCTATACCGAGAGTGCATATAGGAATGAGATGTCTCCTACTACAATTCCTGAGATTCAGAGGATAAATCTTGGAATGACTACTCTTAGTATGAAAGCTATGGGAATAAATGATCTTCTGTCCTTTGATTTTATGGACCCACCATCACCCCAAGCTCTTATTTCTGCCATGGAACAGCTTTACAGTCTTGGAGCATTGGATGAAGAGGGTCTTTTAACCAAACTGGGGAGGAAAATGGCAGAATTTCCTTTGGATCCACCGTTATCTAAGATGTTACTTGCTAGTGTGGATCTTGGATGCAGTGATGAGATTTTGACTATAATTGCCATGATCCAGACTGGCAATATTTTTTACAGGCCAAGGGAAAAGCAAGCTCAGGCAGATCAGAAGAGGGCAAAGTTTTTCCAGCCTGAGGGTGACCATCTTACACTGCTTGCGGTTTATGAGGCTTGGAAAGCTAAGAATTTTTCGGGCCCCTGGTGTTTTGAAAACTTTGTTCAATCTAGATCGTTGAGAAGAGCTCAGGATGTCAGGAAACAGCTTCTCACGATCATGGATAAGTACAAATTGGATGTTGTAAGTGCTGGAAAAAACTTCACAAAGATCAGGAAGGCTATCACTGCTGGATTCTTTTTCCATGCATCAAGAAAGGACCCCCAGGAAGGCTACAGAACACTAGTTGAGAACCAGCCTGTATATATCCATCCAAGTTCAGCTCTGTTCCAGAGACAGCCAGACTGGGTTATCTACCACGAACTTGTGATGACAACTAAGGAATATATGCGTGAGGTCACTGTGATAGACCCCAAATGGCTTGTTGAATTGGCACCAAGATTCTTCAAAGTGGCAGATCCTACAAAGATGAGCAAGCGAAAGCGTCAAGAGCGTATAGAACCACTTTATGATAGATACCACGAGCCAAATTCATGGCGTTTGAGTAAACGCCGTGCTTGA 3651 0.4566 MAMENPEKDELKKLEYLSLVSKVCTELESHTGTGDKVLAEFITDLGQSSESVEEFDSKLKENGAEMPDYFVRTLLTIIHAILPPKKGSSNNKGGGLKQNDGVSKTKFKALAIADDRDRVKELQKEIEDEARDKHGGGDENGEDGFRERDKGRDRRERRDRYDKNDRDERHRDRDRDRDRHRDRDRDRDNGDCDDDDDDGRRDYRRKGRDRESDRYDRDNRYQRGRRDGYEKNGRNGEEDGGERRGRRDSRRDGGGGGGEIELYKVYKGRVSRVMDTGCFVQLEDFRGKEGLVHISQIATRRISNAKDVVKRDQEVFVKVISMTGQKLSLSMRDVDQHTGKDLVPLKKSSEDEGFRMNPQDSKDGPVARTGLSGIRIVEEDGMGSSSRRPLKRMSSPERWEAKQLIASGVLSVSDYPTYDEEGDGLLYQEEGAEEELEIEMNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPESGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSQYSVVMLDEAHERTIHTDVLFGLLKQLVKRRPELRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRINLGMTTLSMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKIRKAITAGFFFHASRKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA* 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2256 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 553 1087 IPR027417 -
Dod08g2256 1216 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 754 934 IPR001650 -
Dod08g2256 1216 Pfam S1 RNA binding domain 264 330 IPR003029 GO:0003676
Dod08g2256 1216 Pfam Helicase associated domain (HA2) 955 1043 IPR007502 GO:0004386
Dod08g2256 1216 SMART S1_6 261 332 IPR022967 -
Dod08g2256 1216 Pfam Helicase conserved C-terminal domain 761 893 IPR001650 -
Dod08g2256 1216 SMART ultradead3 561 745 IPR014001 -
Dod08g2256 1216 CDD S1_DHX8_helicase 263 339 - -
Dod08g2256 1216 Gene3D - 535 738 IPR027417 -
Dod08g2256 1216 Gene3D - 258 343 IPR012340 -
Dod08g2256 1216 Coils Coil 474 494 - -
Dod08g2256 1216 SUPERFAMILY Nucleic acid-binding proteins 261 335 IPR012340 -
Dod08g2256 1216 MobiDBLite consensus disorder prediction 121 260 - -
Dod08g2256 1216 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 678 687 IPR002464 -
Dod08g2256 1216 Gene3D - 938 1037 - -
Dod08g2256 1216 MobiDBLite consensus disorder prediction 197 257 - -
Dod08g2256 1216 PANTHER ATP-DEPENDENT RNA HELICASE 90 1216 - -
Dod08g2256 1216 MobiDBLite consensus disorder prediction 82 105 - -
Dod08g2256 1216 SMART helicmild6 789 893 IPR001650 -
Dod08g2256 1216 Pfam DEAD/DEAH box helicase 569 719 IPR011545 GO:0003676|GO:0005524
Dod08g2256 1216 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 573 736 IPR014001 -
Dod08g2256 1216 MobiDBLite consensus disorder prediction 121 188 - -
Dod08g2256 1216 CDD DEXHc_DHX8 558 736 IPR044762 GO:0000398|GO:0003724|GO:0005524
Dod08g2256 1216 PANTHER - 90 1216 - -
Dod08g2256 1216 Coils Coil 112 132 - -
Dod08g2256 1216 CDD SF2_C_RHA 740 901 - -
Dod08g2256 1216 SMART ha2_5 954 1044 IPR007502 GO:0004386
Dod08g2256 1216 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1101 1176 IPR011709 -
Dod08g2256 1216 ProSiteProfiles S1 domain profile. 263 332 IPR003029 GO:0003676
Dod08g2256 1216 Gene3D - 739 913 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2256 Dod-Chr8 50356145 50362912 Dispersed/Proximal