Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2232 ATGGCTGGGTTGTTCTCTCTAGGTCCACACAGCAAAGAAGAACAAAAGGAAGAAAGAGAACACAACAACAACAACAACAACAACAATAGTAGCAGCAACATTCAATTGTTGTTTCGGAACGAAGAGATCTACAGCAGCAATAGAGGGTTCGAGATATGGCCTCAAACGAACTACTACTCGTTTGGGTTGGGTCCTAGTAGTAGTCATAACAACAACCAGAACAACAACATAAACGACGACGCTTCGGTGTCGTTCTCTGATGAGTCAACTCGGTTCGGGTTCACGGTGATGAGGTCTTCTTCTGGATCGGGTTTAGGAACCGGCACCAATTGCCAGGATTGTGGGAACCAAGCCAAGAAAGATTGTGTCCACCTTCGATGCAGGACTTGTTGTAGGAGCCGAGGGTTTCAGTGCTCCACTCACGTGAAGAGCACGTGGGTCGCCGCCGCGAAGCGCCGCGAACGCCAGCAACAACTCACCGCGTTGCAACATCAACAAGAAGAGCAACAACAATTTCGTGGTGATGTTCAGTCTAGACGACATAGAGATCAACACCAAGGTGCTGCAGGAGCTAGTGGTTCTCATGCTTGTGTTCCGGTGCCAATCACCACCACAGGGTTGGAGCTGGGGCAATTCCCTCCTGAGCTGAACTCGCCAGCTGTGTTTCGGTGTGTGAAAGTCAGCCCAATGGACGCACCGGATGATAGGTATGCGTATCAAACGGCGGTGAACATAGGAGGGCATGTTTTCAAGGGGATACTCTATGATCAAGGACCCGATGGTCCTTTCAGCACTGGGGAAGGTGGCGAAGGTTCATCTCATGGAGGTGAGGCTCATGATCATCAACTCAGTCTCATAACAACAACCGCCACAACTAGTAGTGCCAACCCAATGTTTGACCCTTCTCAACTCTACCCGCCTCCAATGAATGCTTTCATGGCTGGTACGCAATTCTTCCCACCACCAAGATCCTAA 975 0.4995 MAGLFSLGPHSKEEQKEEREHNNNNNNNNSSSNIQLLFRNEEIYSSNRGFEIWPQTNYYSFGLGPSSSHNNNQNNNINDDASVSFSDESTRFGFTVMRSSSGSGLGTGTNCQDCGNQAKKDCVHLRCRTCCRSRGFQCSTHVKSTWVAAAKRRERQQQLTALQHQQEEQQQFRGDVQSRRHRDQHQGAAGASGSHACVPVPITTTGLELGQFPPELNSPAVFRCVKVSPMDAPDDRYAYQTAVNIGGHVFKGILYDQGPDGPFSTGEGGEGSSHGGEAHDHQLSLITTTATTSSANPMFDPSQLYPPPMNAFMAGTQFFPPPRS* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2232 324 Pfam Domain of unknown function (DUF702) 108 260 - -
Dod08g2232 324 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 211 259 IPR006511 -
Dod08g2232 324 MobiDBLite consensus disorder prediction 161 195 - -
Dod08g2232 324 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 322 - -
Dod08g2232 324 MobiDBLite consensus disorder prediction 1 32 - -
Dod08g2232 324 MobiDBLite consensus disorder prediction 258 279 - -
Dod08g2232 324 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 322 IPR007818 GO:0003700|GO:0006355
Dod08g2232 324 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 110 152 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2232 Dod-Chr8 50074886 50077190 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Dod08g2232 DUF702 2.6e-63 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2232 08 50074886 50077190 Dod08g2232 08 50074886 50077190 ECH
Dod08g2232 08 50074886 50077190 Dod03g3195 03 64539503 64541196 ECH
Dod03g3195 03 64539503 64541196 Dod08g2232 08 50074886 50077190 ECH
Dod08g2232 08 50074886 50077190 Dod09g2243 09 43715446 43717244 PCT