Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2229 ATGCAACACAATAACACAAAGCTAAAGCCAAGAATGAAAAATGAGGAAAGAAAACATGCCAGGAGGCCAGCTCAGGCCAACTCTAGAAAGGGGTGTATGAGGGGAAAAGGTGGGCCTGAGAATGCTAGCTGCACCTATAAAGGTGTAAGACAAAGGACATGGGGCAAATGGGTTGCTGAGATCCGTGAACCAAACCGTGGTGCACGCCTCTGGCTTGGGACATTCCAAACATCACATGATGCTGCCTTGGCTTATGATGCTGCTGCACATAAGCTTTATGGCCCTGATGCCAAGCTCAACATCCCTAACCTTGCTGTTGTCCCTCTTACTCCTAGTCCTCCTGCAATTCTTCAGTATCCCTCATTTCCTTTTGTTACCACCTCTCAGGTTGTCCAAATAGACCATATTCAGCAGCAACTACCTCAAATGATTCCACAAGATATGGACATGATCTCTTTAAACAACCTCACCCCTGTAGCGTCCATAGCCAAGGTTGGTGTTAGACCAATATACACCAGTGAAGCCATTGTGTCCCTTCCTTTGGAAACCATCAACAACACCAATAATATCAATGACACTATCGTCAACAACACCAGCATTAACACCAACACCAACAACACCAACATCAACAACAACAACAACAACAGCAACAACAGCAACAACAACAACAACGACACCAACATTGGTATGAAACCTACTGTTGTGGAAAGCTACCAGATGCCAAAGCTTATGGACAAAGATGAGGAGTTGCATTTGTTATGGGGGACAGGGAATGAAGCCATGCCGATTTATGATGATTCTATCTGGACAGAAGCTACTATGTCTTTGGATTTTCCTTTGTTTCCAGATGTTGTTGGTGGGTTTAATGGAGCTGGGAACATGACATGGGACACACAAACTCCATGGTGCAAGTAG 915 0.4481 MQHNNTKLKPRMKNEERKHARRPAQANSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFQTSHDAALAYDAAAHKLYGPDAKLNIPNLAVVPLTPSPPAILQYPSFPFVTTSQVVQIDHIQQQLPQMIPQDMDMISLNNLTPVASIAKVGVRPIYTSEAIVSLPLETINNTNNINDTIVNNTSINTNTNNTNINNNNNNSNNSNNNNNDTNIGMKPTVVESYQMPKLMDKDEELHLLWGTGNEAMPIYDDSIWTEATMSLDFPLFPDVVGGFNGAGNMTWDTQTPWCK* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2229 304 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Dod08g2229 304 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Dod08g2229 304 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Dod08g2229 304 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Dod08g2229 304 MobiDBLite consensus disorder prediction 205 228 - -
Dod08g2229 304 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 20 137 - -
Dod08g2229 304 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
Dod08g2229 304 CDD AP2 44 104 IPR001471 GO:0003700|GO:0006355
Dod08g2229 304 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 169 283 - -
Dod08g2229 304 MobiDBLite consensus disorder prediction 8 22 - -
Dod08g2229 304 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Dod08g2229 304 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 20 137 - -
Dod08g2229 304 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 169 283 - -
Dod08g2229 304 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Dod08g2229 304 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2229 Dod-Chr8 50012337 50013737 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Dod08g2229 AP2 1.1e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2229 08 50012337 50013737 Dod08g2229 08 50012337 50013737 ECH
Dod08g2229 08 50012337 50013737 Dod09g2237 09 43609129 43610556 PCT