Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2224 ATGTATCAGAACCAAGCCTTTTCTTCAGGATCCTATGAGGAAATGTTATCTGGGACCCCCCTTTTACCTCATAACTACAACGAATCTGTAGGAGCACAAAATGAGTTGAAGTTTATCACATCTCTAGGTGACACAGTGACTATGCAGACTATTGATGGCCATTCTACAACAGGTGATCCGGCATGCAACTCTTTTGCTGGTGCTGGAGACTCACATGTTGTTTCTAGGACACAATTGGGACTTATAGACAGTGATCAAAACATGCAGTGCCAAGGCTTGTCCCTCAGCCTTGGATCAGTCATGCCTTCTATTGCATCTGTGCCTCACTTTCAATACCAATACCCCGACACTAGTTTCTCATCACTGATGACTGCTACTATGCCGAACTTAAAGGGGAATTCACCTCTTAAAGATGATGAGGGCACAGTACATAAGGAACTTAGAAATGCTGCTGAATGCATGGCATCTGTGTCTTCTGGTGGCTTTTACAAGAGGGAGGGTTTGTATAATAGTACACACCCCTCAATGTGCCTTAGTGAAGGACAATCTGATCCATGTATGCAAGGATCAGCTGGCTTCTCCAACATGGTCCTAAACTCGAATTACCTTAAGGCAGCACAGGAGTTGCTTGATGAGATAGTTAATGTCCGAAAGGCTTTGAAGCAACCCGGATTGGAGAAACAGCAAAGTTTCTGCGACAATGGATTAGCTGGCTCAAAAGATTCTGATGGAAAATCTACCAGTCAATCTATGCAAGCATCTTCAGGTCCCAATGGTACTTCTACTGCAAACTCTTCAAGTGAGCTATCACCTGCAGACAGACAGAATTTGTTGGACAAGAAGACAAAACTTTTGGCCATGTTAGATGAGGTAGATAAAAGATACAGGCAGTACTGCCATCAGATGCAGATTGTGGTGTCATCATTCGATATGGTTGCTGGTTGTGGAGCAGCAGAACCATACACTGCACTGGCATTGCGCACAATCTCACGCCACTTTCGGTGTTTGCGGGATGCTATTAGTGGCCAAATTCAAGTGACTCAGAGGAGCCTTGGAGAACAAGAGGGAATACCTCGTCTCCGCTATGTTGATCAGCAACTCAGGCAGCATAAGGCCCTTCAGCAACTTGGTGTAATGAGACAAGCTTGGAGACCTCAGAGAGGACTTCCTGAGAGTTCTGTTTCAATACTCCGGGCATGGCTATTCGAGCACTTCCTTCATCCTTATCCAAAGGATTCAGAAAAGATTATGCTTGCAAGGCAAACAGGCTTGACAAGAAACCAGGTGGCAAATTGGTTCATCAATGCAAGGGTGCGTCTTTGGAAGCCAATGGTTGAAGAAATGTACAAAGAAGAGTTTGGTGATTCTGAGATGAGCTGCAATCTCTTATCTGAAAGCAGTACACCCAAGGCTTCAAGAGAAGATGTTCAAGTGTCTGATAATAACAAAAGGGAAGAGTCTCAGGACAACTTATTCACTGTTGAAAGTGTCCAACATGGGCAACTCCAAAGTAGTGATCAGGGAGAAAATGTCATGGATTCTTCTAGGACTAGGAAATTGCAAGGTGACCAAAGGTTTAACATGAACAACACCCCTTATTCAAATGCTTCTATACCAATCAACCACAATGGTAATGATGATGGCTGCCTAATGGCTTCTACTCCCGTCACATATGATCTATCGGAGCTAGGTAACTTTGCCGTTGGTGGCCACGTGTCGCTCGCGTTGGAGCTGAGGAACTGCGAGAGCAATGGATTAGGAATGTCCAATGATGACATGCATAAAAGGGGTAATAACCAGACATTGGCTTCTTCGTCGGAAGCTGATCTGCTAGATTATCACTTGACTGACTCGGGAAAGCAACAACACAAATTTGGCAATCCACATATGTTACATGAGTTTGTTGTGTGA 1911 0.4432 MYQNQAFSSGSYEEMLSGTPLLPHNYNESVGAQNELKFITSLGDTVTMQTIDGHSTTGDPACNSFAGAGDSHVVSRTQLGLIDSDQNMQCQGLSLSLGSVMPSIASVPHFQYQYPDTSFSSLMTATMPNLKGNSPLKDDEGTVHKELRNAAECMASVSSGGFYKREGLYNSTHPSMCLSEGQSDPCMQGSAGFSNMVLNSNYLKAAQELLDEIVNVRKALKQPGLEKQQSFCDNGLAGSKDSDGKSTSQSMQASSGPNGTSTANSSSELSPADRQNLLDKKTKLLAMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQHKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMSCNLLSESSTPKASREDVQVSDNNKREESQDNLFTVESVQHGQLQSSDQGENVMDSSRTRKLQGDQRFNMNNTPYSNASIPINHNGNDDGCLMASTPVTYDLSELGNFAVGGHVSLALELRNCESNGLGMSNDDMHKRGNNQTLASSSEADLLDYHLTDSGKQQHKFGNPHMLHEFVV* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2224 636 SMART HOX_1 383 447 IPR001356 GO:0003677
Dod08g2224 636 MobiDBLite consensus disorder prediction 460 475 - -
Dod08g2224 636 MobiDBLite consensus disorder prediction 460 527 - -
Dod08g2224 636 Gene3D - 380 457 - -
Dod08g2224 636 MobiDBLite consensus disorder prediction 231 272 - -
Dod08g2224 636 MobiDBLite consensus disorder prediction 491 511 - -
Dod08g2224 636 Pfam Homeobox KN domain 400 439 IPR008422 GO:0003677|GO:0006355
Dod08g2224 636 ProSiteProfiles 'Homeobox' domain profile. 380 443 IPR001356 GO:0003677
Dod08g2224 636 SUPERFAMILY Homeodomain-like 384 450 IPR009057 -
Dod08g2224 636 CDD homeodomain 383 444 IPR001356 GO:0003677
Dod08g2224 636 Pfam Associated with HOX 196 341 IPR006563 -
Dod08g2224 636 MobiDBLite consensus disorder prediction 476 490 - -
Dod08g2224 636 SMART prehox3 191 342 IPR006563 -
Dod08g2224 636 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 29 602 - -
Dod08g2224 636 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 29 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2224 Dod-Chr8 49961174 49964177 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Dod08g2224 POX 4.1e-51 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2224 08 49961174 49964177 Dod08g2224 08 49961174 49964177 ECH