LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod08g2216	ATGGCCACATCAAGTGGAAACTCATCCATGTCCACTAGATTCCAGAGCAGTGGCTCTGAGGAGGATCTGCAGCTTCTGATGGATCAAAGGAAGAGGAAGAGGAAGCAATCAAACCGTGAATCGGCAAAGAGGTCAAGGATGAGGAAGCAGAAGTACTTGGACGACCTTATTGCTGAAGTAGAAATGCTCACAAAAGAGAACAACGAAATCCTCACAAGGGTGAACATCACCACAGAGCATTATCTCAAGGTTGAGGCCTATAATTGCATCTTAAGGGCCCAAATTGGTGAGATCAGCCACAGGCTTCAATCACTGAACGATATCCTCAGCCAAATCAACAACACCACAAGCACTATTGGGACTAACAGTGGGTTCTATGAAGCAGATTGTTCCTACCTTGCAAGTGCTGATCATAATTTCATGAACATGCTCTATCTTAACCAACCCATCATGGCATCTGCAGATCACATGGTTCAGTGGTGA	483	0.4513	MATSSGNSSMSTRFQSSGSEEDLQLLMDQRKRKRKQSNRESAKRSRMRKQKYLDDLIAEVEMLTKENNEILTRVNITTEHYLKVEAYNCILRAQIGEISHRLQSLNDILSQINNTTSTIGTNSGFYEADCSYLASADHNFMNMLYLNQPIMASADHMVQW*	161

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod08g2216	160	Coils	Coil	53	73	-	-
	Dod08g2216	160	MobiDBLite	consensus disorder prediction	1	47	-	-
	Dod08g2216	160	Pfam	bZIP transcription factor	30	82	IPR004827	GO:0003700\|GO:0006355
	Dod08g2216	160	PANTHER	BZIP TRANSCRIPTION FACTOR	1	156	-	-
	Dod08g2216	160	SMART	brlzneu	26	90	IPR004827	GO:0003700\|GO:0006355
	Dod08g2216	160	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	28	75	IPR004827	GO:0003700\|GO:0006355
	Dod08g2216	160	CDD	bZIP_plant_GBF1	31	81	IPR045314	GO:0003700\|GO:0006355
	Dod08g2216	160	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	33	48	IPR004827	GO:0003700\|GO:0006355
	Dod08g2216	160	PANTHER	BZIP TRANSCRIPTION FACTOR 44	1	156	-	-
	Dod08g2216	160	SUPERFAMILY	Leucine zipper domain	30	84	IPR046347	GO:0003700\|GO:0006355
	Dod08g2216	160	MobiDBLite	consensus disorder prediction	1	23	-	-
	Dod08g2216	160	Gene3D	-	28	84	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod08g2216	Dod-Chr8	49888382	49890276	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Dod08g2216		bZIP_1	8.5e-12	CL0018

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod08g2216	08	49888382	49890276	Dod08g2216	08	49888382	49890276	ECH
	Dod03g3181	03	64423042	64424596	Dod08g2216	08	49888382	49890276	ECH