Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2200 ATGTTCAGGAACCAATACGACACCGACGTGACAACATGGAGCCCCGCAGGGAGGCTATTCCAGGTGGAATACGCCATGGAGGCAGTGAAGCAAGGATCCGCAGCAATAGGCCTCCGATCCAAAACGCACGTCGTTTTGGCATGCGTCAACAAGGCGAACTCAGAGCTATCCTCTCACCAGAAGAAGATCTTCAAGGTCGACGACCACATCGGCGTCGCGATCGCGGGTTTAACCGCCGATGGGCGCGTCCTCTCGCGCTACATGCGTTCTGAGTGCATCAATTACTCTTACACTTATGAGTCACCGCTACCTGTTGGACGACTCGTTGTTCAGCTCGCCGATAAGGCTCAGGTTTGCACCCAGCGGTCGTGGAAACGTCCTTATGGGGTTGGTCTGCTGGTCGGTGGATTAGATGAATCGGGAGCTCACCTCTATTATAACTGTCCAAGTGGAAACTATTTTGAGTATCAGGCTTTTGCAATTGGGTCTCGCTCTCAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAGAACTTCATGGGCTCCTCAAGGGAAGAACTGATCAAAGATGCACTTATTGCAACCAGGGAGTCCTTGCAGGGTGAAAAGCTCAGGAGTTCCGTATGCACTGTTGCTGTGGTCGGAGTTGGTGAGCCGTTCCACATTTTGGATCAGGAAACTGTTCAAAGGTTAATTGATGAGTTTGAGATTGTGAAGGAGGAAGAAGTTCCTCCACCCGAACCTCAGCCAGCAACTGAGCAGGATGCTCCCACAGATCAGGGTACTGGTGCAGAACAAGGTGGTGCTGCTGCTGCAAGCCAAGATGTTTCTCCCATGGACATTTGA 846 0.5154 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFMGSSREELIKDALIATRESLQGEKLRSSVCTVAVVGVGEPFHILDQETVQRLIDEFEIVKEEEVPPPEPQPATEQDAPTDQGTGAEQGGAAAASQDVSPMDI* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2200 281 Pfam Proteasome subunit A N-terminal signature 6 28 IPR000426 GO:0006511|GO:0019773
Dod08g2200 281 MobiDBLite consensus disorder prediction 239 281 - -
Dod08g2200 281 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 2 232 IPR029055 -
Dod08g2200 281 Pfam Proteasome subunit 29 214 IPR001353 GO:0005839|GO:0051603
Dod08g2200 281 PANTHER PROTEASOME SUBUNIT ALPHA TYPE 1 267 - -
Dod08g2200 281 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 235 IPR029055 -
Dod08g2200 281 ProSiteProfiles Proteasome alpha-type subunit profile. 21 232 IPR023332 -
Dod08g2200 281 SMART Proteasome_A_N_2 6 28 IPR000426 GO:0006511|GO:0019773
Dod08g2200 281 ProSitePatterns Proteasome alpha-type subunits signature. 6 28 IPR000426 GO:0006511|GO:0019773
Dod08g2200 281 CDD proteasome_alpha_type_1 6 215 IPR035144 GO:0019773
Dod08g2200 281 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 1 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2200 Dod-Chr8 49698129 49701712 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2200 08 49698129 49701712 Dod08g2200 08 49698129 49701712 ECH