LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod08g2195	ATGCCATTCAGGAATATAGTGAGGGAGCTCAAGGAGATTGGGGAGGGAATTGGCAACATGTATAGAAGAGGGACAGACTCCAAGCATGTGCATCATCATCATCATCACCATCGCCATGGAAAGTCTCATATAGCACCTGAATGTTCCTCACCATCATCATTATCATCACCATCTTTGTCATCATCATCGTCTATCATAGTGAGTGATCAGAGCCAGTGGGCTAACTTACCACCTGAGTTGCTATTAGACATAATTCAAAGGGTGGAAGCTAGTGAAATTTCATGGCCTGCAAGGAGAGCACTTGTGGCATGTGCCTCAGTTTGTAGGACTTGGAGGGAGACAACAAAGGATGTGGTCAAGACACCAGAACGGTGTGGTTGGCTCACTTTCCCTATATCACTGAAGCAGCCTGGTCCAAGAGACACTCCAATTCAGTGTTTTATTAAGAGAGAAAGGGTGACTTCTACGTATCGTTTATACCTCGGTCTGAGCCCTGCTCTTTCTGGTGACGTGAGCAAACTGCTATTGGCAGCAAAGAAAATTAGAAAGGCAACATGCACCGAATTTTTAATATCGTTGGTTGCTAATGATTTCTCTCGCACTAGCAATACTTACAATGGAAAGTTGAGGTCTAATTTTCTTGGCACCAAGTTTATGATCTTGGATGGTCATCCCCCACATGATTCTTCACTTCCATTGAATTGCAAGTTGCAGCAAAGAGTCCATCTGAAGCCGGGACTTCCAAGGGTTGCTCCTACAAACTATAATGTGGCTACAGTATCATATGAACTCAATGTTCTACGTACAAGAGGTCCAAGGCGAATGCGGTGTACAATGCACCTGATCCCCATATCTGCAATCCAAGAAGGAGGAACTGCTCCTACTCCTTTGAAGTTCACCAACTGGCTTAATGAATATTCATCTACCATGCCTATTTCAAAAGGAAAGAAGCCAGGAGTTGTTGACATTGACTCAGCTAGCACTTGCAGGACTACAGAATCAACCCAGAGTGTAAGCGAACCACTGATTTTGAAAAACAAGGCTCCTAGATGGCATGAGCAACTGCAATGTTGGTGCTTGAATTTCAAGGGACGAGTCACAGTGGCATCTGTGAAGAACTTCCAGCTTGTAGCAGCCGCAGAACCATCCCAAAATGTTCCAGCTGCAGAACAAGAGAAAGTGATACTACAGTTTGGAAAAATTGGAAAGGACATATTCACCATGGATTACCGGTATCCCCTTTCTGCCTTTCAAGCCTTTGCAATCTGCTTAAGTAGCTTCGACACCAAACCAGCTTGTGAATGA	1305	0.4429	MPFRNIVRELKEIGEGIGNMYRRGTDSKHVHHHHHHHRHGKSHIAPECSSPSSLSSPSLSSSSSIIVSDQSQWANLPPELLLDIIQRVEASEISWPARRALVACASVCRTWRETTKDVVKTPERCGWLTFPISLKQPGPRDTPIQCFIKRERVTSTYRLYLGLSPALSGDVSKLLLAAKKIRKATCTEFLISLVANDFSRTSNTYNGKLRSNFLGTKFMILDGHPPHDSSLPLNCKLQQRVHLKPGLPRVAPTNYNVATVSYELNVLRTRGPRRMRCTMHLIPISAIQEGGTAPTPLKFTNWLNEYSSTMPISKGKKPGVVDIDSASTCRTTESTQSVSEPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPSQNVPAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE*	435

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod08g2195	434	Gene3D	Tubby Protein; Chain A	131	434	IPR025659	-
	Dod08g2195	434	Pfam	F-box domain	73	119	IPR001810	GO:0005515
	Dod08g2195	434	ProSitePatterns	Tub family signature 1.	362	375	IPR018066	-
	Dod08g2195	434	SUPERFAMILY	F-box domain	68	117	IPR036047	GO:0005515
	Dod08g2195	434	SUPERFAMILY	Tubby C-terminal domain-like	122	434	IPR025659	-
	Dod08g2195	434	ProSitePatterns	Tub family signature 2.	419	434	IPR018066	-
	Dod08g2195	434	Gene3D	-	68	120	-	-
	Dod08g2195	434	PRINTS	Tubby superfamily signature	362	378	IPR000007	-
	Dod08g2195	434	PRINTS	Tubby superfamily signature	254	281	IPR000007	-
	Dod08g2195	434	PRINTS	Tubby superfamily signature	344	361	IPR000007	-
	Dod08g2195	434	PRINTS	Tubby superfamily signature	391	410	IPR000007	-
	Dod08g2195	434	PRINTS	Tubby superfamily signature	205	229	IPR000007	-
	Dod08g2195	434	PRINTS	Tubby superfamily signature	412	434	IPR000007	-
	Dod08g2195	434	PRINTS	Tubby superfamily signature	189	205	IPR000007	-
	Dod08g2195	434	MobiDBLite	consensus disorder prediction	26	42	-	-
	Dod08g2195	434	PANTHER	TUBBY-LIKE F-BOX PROTEIN	1	434	-	-
	Dod08g2195	434	Pfam	Tub family	134	429	IPR000007	-
	Dod08g2195	434	MobiDBLite	consensus disorder prediction	22	56	-	-
	Dod08g2195	434	PANTHER	TUBBY-RELATED	1	434	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod08g2195	Dod-Chr8	49655119	49657225	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TUB	Dod08g2195		Tub	1e-102	CL0395

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod08g2195	08	49655119	49657225	Dod08g2195	08	49655119	49657225	ECH