Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2144 ATGGGTTGGCTTAGCAAAATTTTTAAAGGCTCTGACCATAAGATTTCAGAAGGGCATTATCATACGAATTATAATGGGGATGCGGAATATTACATGCCATCAACCTCAGGGGATGTTTGGGCTGAGAATGAGAATGAGGATATAGATCGTGCTATTGCATTGTCTCTGGTAGAAGAGAATCAGAAGGGAAACAATGTAAATGACTACTGGTCACAAGTAGAAGACGATGAACAACTTGCCAGAGCTATAGAAGAAAGCCTAAATTTGGAGTCTCCTCCCAAATATGGAAATGAAAATATGTATCATCAGCCAGTTCCAGTGTATTTTCCAATGGGGTCCAGTTATTTGTATAATAGGATTTGTGCCGGCTGCAATACTGAGATTGGTTATGGACGATATCTAAATTGCTTGAATGCATTCTGGCATCCTGAATGCTTTCGCTGCCGTGCTTGCAACCTACCAATCTCTGATTATGAGTTCTCCACATCAGGAAATTACCCTTACCATAAATCATGCTATAAGGAAAGCTACCATCCAAAATGTGATGTCTGCAAGCACTTTATTCCAACAAACCCTGTTGGTCTTATTGAATATAGGGCACATCCATTCTGGATCCAGAAATATTGCCCTTCTCATGAACACGATAATACTCCACGCTGTTGCAGCTGTGAGCGAATGGAGTCCCGAGAGACAGGATATATTGGTCTTAATGATGGCCGGAAGCTCTGCTTAGAGTGCCTGGACTCTGCTATCATGGATACTAGTGAATGCCAACCCCTTTATTCTGATATACAAAAATTTTATGAAAGCCTAAATATGAAACTGGACCAGCAAATTCCACTACTCTTGGTTGAAAGACAAGCCCTAAATGAAGCAAGAGAGGGGGAGAAGAATGGCCATTATCACATGCCTGAGACCAGAGGACTGTGCCTCTCGGAGGAACAGACTATTAGCACTATCTCAAGACGACCTAGACTTGGGACAGGAAATAGAGCAATAGACATGAGAACACAACCATACAAACTGACTAGACGCTGTGATGTGACAGCAATTCTCATTTTATTTGGTCTTCCAAGGTTGCTCACTGGATCGATTCTAGCTCATGAGATGATGCATGCGTGGCTGCGGCTTAAAGGTTATCGGACTTTAAGTCAAGACGTCGAAGAAGGTATCTGTCAGGTTATGGCGCACATGTGGTTGGTATCCGAACTCTCTTCTGCATCAGCCTCATCCTCATCTTCATCCTACACATCTAGAAAAGGGAAAAGACCCCAGTTTGAGAGGAAGCTTGGGGAGTTCTTCAAGCACCAGATTGAATCAGACATTTCCCCAGTTTATGGAGATGGGTTTAGGGCAGGTCAGCAAGCAGTGCGTAAGTATGGTCTACAGAAGACCCTTAACCATATCTGGATGACGGGTACTTTCCCATTTTGA 1434 0.4303 MGWLSKIFKGSDHKISEGHYHTNYNGDAEYYMPSTSGDVWAENENEDIDRAIALSLVEENQKGNNVNDYWSQVEDDEQLARAIEESLNLESPPKYGNENMYHQPVPVYFPMGSSYLYNRICAGCNTEIGYGRYLNCLNAFWHPECFRCRACNLPISDYEFSTSGNYPYHKSCYKESYHPKCDVCKHFIPTNPVGLIEYRAHPFWIQKYCPSHEHDNTPRCCSCERMESRETGYIGLNDGRKLCLECLDSAIMDTSECQPLYSDIQKFYESLNMKLDQQIPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEEQTISTISRRPRLGTGNRAIDMRTQPYKLTRRCDVTAILILFGLPRLLTGSILAHEMMHAWLRLKGYRTLSQDVEEGICQVMAHMWLVSELSSASASSSSSSYTSRKGKRPQFERKLGEFFKHQIESDISPVYGDGFRAGQQAVRKYGLQKTLNHIWMTGTFPF* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2144 477 CDD LIM_DA1 121 173 - -
Dod08g2144 477 PANTHER PROTEIN DA1-RELATED 2 1 477 IPR045218 -
Dod08g2144 477 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 43 62 IPR003903 -
Dod08g2144 477 ProSitePatterns LIM zinc-binding domain signature. 121 155 IPR001781 -
Dod08g2144 477 Pfam LIM domain 121 175 IPR001781 -
Dod08g2144 477 SMART uim 43 62 IPR003903 -
Dod08g2144 477 SMART uim 74 93 IPR003903 -
Dod08g2144 477 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 147 202 - -
Dod08g2144 477 Gene3D Cysteine Rich Protein 113 178 - -
Dod08g2144 477 ProSiteProfiles LIM domain profile. 119 179 IPR001781 -
Dod08g2144 477 SMART lim_4 120 172 IPR001781 -
Dod08g2144 477 Pfam Protein DA1 271 471 IPR022087 -
Dod08g2144 477 PANTHER PROTEIN DA1-LIKE 1 477 - -
Dod08g2144 477 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 118 146 - -
Dod08g2144 477 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 74 93 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2144 Dod-Chr8 49141489 49148502 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dod08g2144 DA1-like 4.1e-98 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2144 08 49141489 49148502 Dod08g2144 08 49141489 49148502 ECH