Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2131 ATGGCTATGAGAGAGGATAGGGAAGGCGCCATGTTCAGCGCGCGTCCACCGCCGGTCATGCATTCAGATCCGCCTAGGATGTCGACCACAGAGCTCTACTCTGATGACGAGTTCGCCAGGCGAAGCAGCAGTGCTGCCTCCGTCACGAGCCCTTATTACTATGACCATAGCCGTGTGAGCGGGGAGGGCTCCCCAATGATGATGTCACCATGGAATCAAACCACAAACTCCCCTTTCGCAAAGGCACAATGGTCCCAGTACGAGGAGAGAGCCCCGCAGAACGCCCTCATAGGTTCCCTCGTCCGTGAAGAGGGACACATCTATTCCCTAGCTGCCTCTGGTGACCTCTTGTACACAGGATCGGACAGCAAGAACATTCGTGTTTGGAAGAACCTCAAAGAATATTGCGGCTTCAAATCAAACAGCGGTTTGGTCAAAACCATCGTAATCTCCGGCCAGAAAATCTTCACCGGTCACCAAGACGGTAAAATCCGTGTTTGGAAAGTTAATCCTAAGACACCTGGTGCTCACAAACGTGCGGGGACATTGCCAACGTTAAAAGACATCTTCAAGAGCTCAATTAGACCCAGCAACTATATTGAGGTTCGGAAGCGTCGTACGGCGCTTTGGATTAAGCACTCTGATGCTGTTTCTTGCTTGAGCCTCTCCCATGATAAAACGTACCTGTACTCGGCTTCGTGGGATAGGACCATAAAGGTGTGGCGGATCTCAGACTCCAAGTGCCAGGAATCCATCCCGGCCCACAACGACGCTGTGAACTCCGTCGTGTGCGGCCACGACGGCCTCCTCTTCTCCGGCTCCGCCGACGGCACAGTCAAGATCTGGAAGCGCGAGCCTCGCGGCTCAAAGGGAACGAAACACACTCTCTCCCAAACACTCCTCAATCAAGAATGCGCCGTAACTGCACTCGCACTCGACCAAACCTCCTCCTCCTTCCTCTACTCCGCCTCCTCCGATGGCCTCGTCAACTTCTGGGACCACCGCAACAACAACCAGTTCTCCCACTCCGGCGTCCTCACCGCCCACAAACTCGCGGTCCTCTGCCTCGCCGCTGCCGGAACCTTAGTTTTCAGCGGAAGCGCCGACAAGACGATTTGTGTATGGAAGAGGGATGGCGTGATACACACGTGCGTGTCGGTGCTGACTGGGCATGATGGTCCGGTGAAGTGTTTGGCGGCGGAGGAAGATCGGGAGGCGGCGGCGCGTGGCTGGTGGTGGTAG 1242 0.5564 MAMREDREGAMFSARPPPVMHSDPPRMSTTELYSDDEFARRSSSAASVTSPYYYDHSRVSGEGSPMMMSPWNQTTNSPFAKAQWSQYEERAPQNALIGSLVREEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEYCGFKSNSGLVKTIVISGQKIFTGHQDGKIRVWKVNPKTPGAHKRAGTLPTLKDIFKSSIRPSNYIEVRKRRTALWIKHSDAVSCLSLSHDKTYLYSASWDRTIKVWRISDSKCQESIPAHNDAVNSVVCGHDGLLFSGSADGTVKIWKREPRGSKGTKHTLSQTLLNQECAVTALALDQTSSSFLYSASSDGLVNFWDHRNNNQFSHSGVLTAHKLAVLCLAAAGTLVFSGSADKTICVWKRDGVIHTCVSVLTGHDGPVKCLAAEEDREAAARGWWW* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2131 413 PRINTS G protein beta WD-40 repeat signature 229 243 IPR020472 -
Dod08g2131 413 PRINTS G protein beta WD-40 repeat signature 155 169 IPR020472 -
Dod08g2131 413 PRINTS G protein beta WD-40 repeat signature 270 284 IPR020472 -
Dod08g2131 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 210 247 - -
Dod08g2131 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 210 251 IPR001680 GO:0005515
Dod08g2131 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 252 283 - -
Dod08g2131 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 300 342 IPR001680 GO:0005515
Dod08g2131 413 PANTHER PROTEIN JINGUBANG 18 406 - -
Dod08g2131 413 Gene3D - 293 408 IPR015943 GO:0005515
Dod08g2131 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 252 283 IPR001680 GO:0005515
Dod08g2131 413 SMART WD40_4 93 130 IPR001680 GO:0005515
Dod08g2131 413 SMART WD40_4 245 283 IPR001680 GO:0005515
Dod08g2131 413 SMART WD40_4 131 168 IPR001680 GO:0005515
Dod08g2131 413 SMART WD40_4 293 333 IPR001680 GO:0005515
Dod08g2131 413 SMART WD40_4 203 242 IPR001680 GO:0005515
Dod08g2131 413 SMART WD40_4 339 376 IPR001680 GO:0005515
Dod08g2131 413 MobiDBLite consensus disorder prediction 1 26 - -
Dod08g2131 413 Gene3D - 71 188 IPR015943 GO:0005515
Dod08g2131 413 SUPERFAMILY WD40 repeat-like 96 400 IPR036322 GO:0005515
Dod08g2131 413 Pfam WD domain, G-beta repeat 104 130 IPR001680 GO:0005515
Dod08g2131 413 Pfam WD domain, G-beta repeat 343 376 IPR001680 GO:0005515
Dod08g2131 413 Pfam WD domain, G-beta repeat 247 283 IPR001680 GO:0005515
Dod08g2131 413 Pfam WD domain, G-beta repeat 213 241 IPR001680 GO:0005515
Dod08g2131 413 Gene3D - 201 292 IPR015943 GO:0005515
Dod08g2131 413 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 18 406 IPR045182 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2131 Dod-Chr8 49015474 49019071 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2131 08 49015474 49019071 Dod08g2131 08 49015474 49019071 ECH
Dod09g1586 09 37631860 37636022 Dod08g2131 08 49015474 49019071 PCT