Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2129 ATGTTCACAAATTCTCACCCAATAATGCAAACCTTAGCACCTTTGCAAGGGCCAGATTTGTCCTTAAACATAAGCCCACCTTGCGTTCCTGAGTTTGAAGCCAAAGAAGTTGGAAGAAACTACAATAACCTGTTGAGTAGCAAAGCTTTTTACAATGATATGTGCTCAACAACCTCAGATTCTTCCACAAGTGGAAGTGATTTAAGCCATGAGAATAACACTAATGGCTTATTCCCCAACCATGACACTAGTGTCTACAGCCTTGTTAATCATCGTGAGCCTACATTGAGCTTAGGCTTTGAAGCCGGAGTGGATTTGAATCCTCATCATCATCATAATCATCATCATCAAGTACATGGACTCTCATCAAGAAGCTTCAACCACCACCTCCATCCTCAAATCTATGGCCGCGAGTTCAAGCGAAATACCAGGGTCATCAATGGTGTGAAAAGAAGCGTGAGAGCACCAAGGATGAGATGGACCACCACCCTCCATGCCCATTTTGTTCATGCGGTTCAGCTTCTTGGCGGCCATGAAAGGGCAACTCCGAAGTCTGTGTTAGAGCTAATGAATGTTAAGGATCTAACCCTAGCACATGTCAAAAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACTGACAAAAGCACAGGTCATGGGCAGACAGATATGGGTTTGAATCCAAGGCCAGGGATTAATGTTGTTCATATGCATGGAGCATTACCTTGTGGAAGAGCCAATTTACCACACCCACTACAAAATTCCCAAAGGGCATCGTGGCAATCATCAATAGAGACAAATACAAACAATAGTAGACAAAAACCCGAAATTGGTTTGACGAATTCTCATGTAAAGGGGAATGAAACCATGGTGGCTGAGCATAATTATGGAGGCATGTCGAATTGCATGAAGGAGAGGTTGGAGTCTACCCCTTTGTCACGTTCCGAGGCAATGCTTGACCTTGAATTCACCCTTGGAAGGCCAAGTTGGGAAAAAGACGAATCATCAAGAGAGCTAACCCTTCTCAAGTGTTAA 1035 0.4367 MFTNSHPIMQTLAPLQGPDLSLNISPPCVPEFEAKEVGRNYNNLLSSKAFYNDMCSTTSDSSTSGSDLSHENNTNGLFPNHDTSVYSLVNHREPTLSLGFEAGVDLNPHHHHNHHHQVHGLSSRSFNHHLHPQIYGREFKRNTRVINGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTGHGQTDMGLNPRPGINVVHMHGALPCGRANLPHPLQNSQRASWQSSIETNTNNSRQKPEIGLTNSHVKGNETMVAEHNYGGMSNCMKERLESTPLSRSEAMLDLEFTLGRPSWEKDESSRELTLLKC* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2129 344 Pfam Myb-like DNA-binding domain 157 208 IPR001005 -
Dod08g2129 344 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 156 209 IPR006447 GO:0003677
Dod08g2129 344 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 344 IPR044847 GO:0000976|GO:0006355|GO:0010158
Dod08g2129 344 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 344 - -
Dod08g2129 344 SUPERFAMILY Homeodomain-like 153 210 IPR009057 -
Dod08g2129 344 MobiDBLite consensus disorder prediction 261 280 - -
Dod08g2129 344 Gene3D - 155 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2129 Dod-Chr8 48994421 48998540 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dod08g2129 Myb_DNA-binding 1.5e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2129 08 48994421 48998540 Dod08g2129 08 48994421 48998540 ECH
Dod08g2129 08 48994421 48998540 Dod09g2147 09 42905360 42909837 PCT