Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2128 ATGGAAGGACAAAATTGCCAAAACTGCAGATCGTGGGTGGAAGACATTTACTGGACCCATTTCCAGTTCCACCATTTTGCCCAGTTTCTCCCAAGCACTTATGATCAACATCTTGCACTTCCCAAAACATTTTCTGGTAATTTAAAGAAGAAGCTGCCAGGAAATGTGAGCCTTAAAGGTCCTGGTGGTGTCGTGTGGAATATAGGATTGACGACAAGAGATGATACGTTGTACTTCTCGCACGGTTGGCAACAGTTTGTGAAAGATCACTCCCTTAGAGAGAATGATTTCCTGGTTTTTAAGTTCAATGGGGAATCAATGTTTGATGTTTTAATATTCGATGGGGGGAGCTTATGCGAGAAGGCGGCTGCTTATTTTGTTCGGAATGTTGGGCATGGCCATACTGAACATGGGGGTGGATGTTTGACCAAGACAAAGGGCACAGATAATTCTATGGAAGAAGTTAACACCACTTCTAATGCCGGTGTTGAATGTGCTTCTCCTGAGAAATCTGCACCTGTTAACAGTACTGGAGTCCCAGCAGCAGTGCCCCTTGAAACTCCCAGTGAAAGGACTTTTAATGCTGGTGTTGAATCGGCTACCCCTCTGCAATTCATCAATGTTGATGCTGGTGCTGGTGCAGATGCTAACGGTAATGGAGTCACAGTGGCAGCAGTTGCTCCCACCCGCGCTGGTAAAAGGATCAGGAAGCCAGTTGCCCCCTTTAGTCATGTTGAGACTAAGCGGAGAGGAAGGGCATCAAAAGCATCAAATGCTTATCAGGAAGTTGTTAACGCAGTGACTGATCCTGAACCTGCTTCTGTGGGTAAAAGTGGGGGATATGAATTATATACCTCGAATAGAAGGCCTGTCACAGAAAATGAGATAAGTAGTGCCTTCCATATGGCTAAGGCAGCATGTACCAATGACAGCCTGTGCGTTGTTATGCGACCCACTCATGTATATAAGAGATTCTACGTGTCGATCCCTAATAAGTGGATTCTGGAACATATCCCTCCAAAAACTCAAGATGTTATATTACGCATGGTTCAGAATGAATGGCTTGCCAAATACAGCTTCCATAATATTCGTCATAGTGGAGGAATCACTGGTGGTTGGAAGCATTTTGCTCTGGATAATAACCTTGAAGAGTTTGATGTGTGTGTTTTTAAACCAGGAGGCCTAGTCAACAGCACATTGATTTTGGATGTGAGCATTTTCAGAGTTGTTGAGGAGATCACACCTTTGTATAGAGCCAAGTCTCCTGCAAAAAGTGCTAAGAAAAAGGCCTTGAGGGCCATTCAGATGTAG 1311 0.4432 MEGQNCQNCRSWVEDIYWTHFQFHHFAQFLPSTYDQHLALPKTFSGNLKKKLPGNVSLKGPGGVVWNIGLTTRDDTLYFSHGWQQFVKDHSLRENDFLVFKFNGESMFDVLIFDGGSLCEKAAAYFVRNVGHGHTEHGGGCLTKTKGTDNSMEEVNTTSNAGVECASPEKSAPVNSTGVPAAVPLETPSERTFNAGVESATPLQFINVDAGAGADANGNGVTVAAVAPTRAGKRIRKPVAPFSHVETKRRGRASKASNAYQEVVNAVTDPEPASVGKSGGYELYTSNRRPVTENEISSAFHMAKAACTNDSLCVVMRPTHVYKRFYVSIPNKWILEHIPPKTQDVILRMVQNEWLAKYSFHNIRHSGGITGGWKHFALDNNLEEFDVCVFKPGGLVNSTLILDVSIFRVVEEITPLYRAKSPAKSAKKKALRAIQM* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2128 436 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 170 IPR044837 -
Dod08g2128 436 Pfam B3 DNA binding domain 314 394 IPR003340 GO:0003677
Dod08g2128 436 Pfam B3 DNA binding domain 36 113 IPR003340 GO:0003677
Dod08g2128 436 Gene3D - 19 119 IPR015300 -
Dod08g2128 436 ProSiteProfiles B3 DNA-binding domain profile. 312 410 IPR003340 GO:0003677
Dod08g2128 436 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 5 170 - -
Dod08g2128 436 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 264 416 - -
Dod08g2128 436 Gene3D - 291 412 IPR015300 -
Dod08g2128 436 ProSiteProfiles B3 DNA-binding domain profile. 23 116 IPR003340 GO:0003677
Dod08g2128 436 CDD B3_DNA 26 114 IPR003340 GO:0003677
Dod08g2128 436 SUPERFAMILY DNA-binding pseudobarrel domain 23 114 IPR015300 -
Dod08g2128 436 SMART B3_2 312 410 IPR003340 GO:0003677
Dod08g2128 436 SMART B3_2 26 116 IPR003340 GO:0003677
Dod08g2128 436 CDD B3_DNA 311 408 IPR003340 GO:0003677
Dod08g2128 436 SUPERFAMILY DNA-binding pseudobarrel domain 311 393 IPR015300 -
Dod08g2128 436 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 264 416 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2128 Dod-Chr8 48965840 48969558 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod08g2128 B3 6.5e-11 CL0405