Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2106 ATGGAACAATCCAACGGTTCTGATTCGTCACAGCAACAAAAACAACAACCGTCATCGGAACAAAATCAACAACCGCAACGGCAGCCGCCCTCACAGGCGGTCCCTGTGCCGCAGCAGTGGGTGCCGATGCAGTATCCGGCGGCGGCGATGGTAATGCAGCACCGAATGATGCCGCCGCCTCCGCCGCCGCCTTCGCACTTTGCGACGCCGCCGCCGCACTACGTGCCTTACCACCACCACCACCAGTATCACGTGCCGCCGCACCTGCCTCACCACAACCAGAACCAGCATCAGCAGCAGAATGGATCCAACGGCGGTGGTGGCGAGAACAACAAGACGGTTTGGGTCGGCGATTTGTATCACTGGATGGACGAGAACTATCTCCATCGGTGTTTCGCTTCTACAGGCGAGATTTCCTCCATCAAGGTTATTCGCAATAAGCATACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTTCATTCACATGCCACAGCTGAGAAAGTTTTACTGAGTTATGCTGGAATTTTGATGCCTAATACTGAGCAACCTTTCCGCCTGAACTGGGCAACATTTAGCACAGGAGACAAGTCTTCAGACAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGCTTGTTGCATGAAACTTTTGCTAGTGTATATCCTTCTGTCAAAGCTGCAAAAGTGGTTTTTGATGCCAATACGGGCCGTTCAAAGGGCTATGGTTTTGTCAGGTTTGGAGATGATAGCGAGAGGACGCAGGCTATGACTCAAATGAATGGTGTTTTCTGTTCTAGCAGGCCTATGCGTATTGGGGCTGCAACTCCAAGGAAATCAGCTGGCCATCAACAAGGAGGCCAAGCAAATGGTACATCCGGCCAATCTGAAGCAGAATCGACAAACACAACTATATTTGTTGGAGGACTCGACCCTGATGTTTCAGATGAAGATCTAAGGCAACCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAGGGGTGTGGTTTTGTCCAATTTGCAAACAGAAATAATGCTGAAGAGGCGTTGCAAAAGCTAAATGGGGCCGTGATTGGCAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCAGCAAATAAGCAGGTTAGGATGGATTTTGGTAACCCCTGGAGTGGGGGTTATTATGGGGCCCCTATTTATGATGGCTTGGGATATGCGTTGCCGCCACCTCATGATCCAACTATTTACGCAGCTGCATATGGTGCTTACCCCTTTTATGGAGGACACCAACAGCAAGTAAGCTGA 1323 0.4913 MEQSNGSDSSQQQKQQPSSEQNQQPQRQPPSQAVPVPQQWVPMQYPAAAMVMQHRMMPPPPPPPSHFATPPPHYVPYHHHHQYHVPPHLPHHNQNQHQQQNGSNGGGGENNKTVWVGDLYHWMDENYLHRCFASTGEISSIKVIRNKHTGLSEGYGFVEFHSHATAEKVLLSYAGILMPNTEQPFRLNWATFSTGDKSSDNVPDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDSERTQAMTQMNGVFCSSRPMRIGAATPRKSAGHQQGGQANGTSGQSEAESTNTTIFVGGLDPDVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGAVIGKQTVRLSWGRNPANKQVRMDFGNPWSGGYYGAPIYDGLGYALPPPHDPTIYAAAYGAYPFYGGHQQQVS* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2106 440 Gene3D - 192 300 IPR012677 -
Dod08g2106 440 CDD RRM3_NGR1_NAM8_like 309 380 - -
Dod08g2106 440 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 33 439 - -
Dod08g2106 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 382 IPR000504 GO:0003723
Dod08g2106 440 MobiDBLite consensus disorder prediction 288 306 - -
Dod08g2106 440 SMART rrm1_1 206 280 IPR000504 GO:0003723
Dod08g2106 440 SMART rrm1_1 113 188 IPR000504 GO:0003723
Dod08g2106 440 SMART rrm1_1 311 378 IPR000504 GO:0003723
Dod08g2106 440 MobiDBLite consensus disorder prediction 1 38 - -
Dod08g2106 440 MobiDBLite consensus disorder prediction 281 306 - -
Dod08g2106 440 MobiDBLite consensus disorder prediction 61 110 - -
Dod08g2106 440 CDD RRM1_SECp43_like 113 193 - -
Dod08g2106 440 CDD RRM2_SECp43_like 204 283 - -
Dod08g2106 440 Gene3D - 301 405 IPR012677 -
Dod08g2106 440 Gene3D - 111 191 IPR012677 -
Dod08g2106 440 SUPERFAMILY RNA-binding domain, RBD 204 383 IPR035979 GO:0003676
Dod08g2106 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 284 IPR000504 GO:0003723
Dod08g2106 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 181 IPR000504 GO:0003723
Dod08g2106 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 375 IPR000504 GO:0003723
Dod08g2106 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 276 IPR000504 GO:0003723
Dod08g2106 440 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 33 439 - -
Dod08g2106 440 MobiDBLite consensus disorder prediction 89 110 - -
Dod08g2106 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 192 IPR000504 GO:0003723
Dod08g2106 440 SUPERFAMILY RNA-binding domain, RBD 77 194 IPR035979 GO:0003676
Dod08g2106 440 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2106 Dod-Chr8 48713887 48718821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g2106 114 390 Eukaryotic Initiation Factors Gene Family AT4G34110 28.014 7.96e-30 120
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2106 08 48713887 48718821 Dod08g2106 08 48713887 48718821 ECH
Dod08g2106 08 48713887 48718821 Dod09g2128 09 42739333 42743501 PCT