Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2064 ATGGGTGGCAGTGCCAATGGTAGTGGTGGTGGTGATGATGCATCACCACCAGCACCACCACAATACTCATGTTCATCATCATCATCAGTGATGAGAGGAGGAGCCTTCCCTTCTTGTGATTCAGAAGAGTTCTCAGCTTTGTTCAACCAACTCCTCTCCCCACAAATGGTAATGGACCCCAACAACAGCCATTCCGGGTCGGGTCAACAACCAAACCGGGTTATCCCTTTTTCTGTTTCTTCCTCTACTTTCCATTTCTCTTCTCATCATGATATTGATGACCCCTTTGATCATCACCATCATAATCATCATCATCATGATCATAATAATGCTTACATACCTCTCTCTGATGGCAACACCAAACAGCAGCTCCCCATCACTTGTCCCATTCAGAAGAATGGTGAGGATTCAGAGTTGCCATCAAAGCCTGTCCCACCATCACGTACTTCTTCAAAGAGAAGCAGAGCTGCAGAGTTTCATAATTTGTCTGAAAAGAGAAGGAGGAGTAGGATTAATGAGAAGATGAAAGCCTTGCAGAATTTAATTCCAAATTCTAACAAGACAGACAAAGCTTCAATGCTAGATGAGGCCATCGAATATTTAAAGCAACTTCAACTTCAAGTGCAGATGTTAATGATGAGAAATGGTTTGAGCTTGCATCCAATGTCTTTACCAGGAGGATTGAGACCAATGGTATTGCCTCACACTGGTTTGAATTTTGATGAGGGTAATGGATTTCAGAATTCTATCAGTGGAATTGCATCATCTGCAAATGATGAAAGCTTGGCGCGGCCATCATTTAGTTTTGCGAAACAATGCAGCATCTCAAATCAGTCTTTTGCCATAACCTCGGTGACAAATATAGCTGGTTCAGATACCTCATCGGGCTTTCAACCCCCTATTAAGGATGCACACTGCAGCAGCGTGCCACAACTGCATTTGGATACAACAAGGATTGGAAAAACCCCTTCTCCAGATGTATCTTAA 987 0.4306 MGGSANGSGGGDDASPPAPPQYSCSSSSSVMRGGAFPSCDSEEFSALFNQLLSPQMVMDPNNSHSGSGQQPNRVIPFSVSSSTFHFSSHHDIDDPFDHHHHNHHHHDHNNAYIPLSDGNTKQQLPITCPIQKNGEDSELPSKPVPPSRTSSKRSRAAEFHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGLSLHPMSLPGGLRPMVLPHTGLNFDEGNGFQNSISGIASSANDESLARPSFSFAKQCSISNQSFAITSVTNIAGSDTSSGFQPPIKDAHCSSVPQLHLDTTRIGKTPSPDVS* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2064 328 CDD bHLH_AtPIF_like 155 217 - -
Dod08g2064 328 MobiDBLite consensus disorder prediction 1 35 - -
Dod08g2064 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 215 IPR036638 GO:0046983
Dod08g2064 328 MobiDBLite consensus disorder prediction 153 167 - -
Dod08g2064 328 Pfam Helix-loop-helix DNA-binding domain 159 205 IPR011598 GO:0046983
Dod08g2064 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 204 IPR011598 GO:0046983
Dod08g2064 328 PANTHER TRANSCRIPTION FACTOR SPATULA 78 305 - -
Dod08g2064 328 MobiDBLite consensus disorder prediction 130 167 - -
Dod08g2064 328 MobiDBLite consensus disorder prediction 19 34 - -
Dod08g2064 328 Gene3D - 150 214 IPR036638 GO:0046983
Dod08g2064 328 SMART finulus 161 210 IPR011598 GO:0046983
Dod08g2064 328 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 78 305 IPR031066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2064 Dod-Chr8 48084605 48087309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g2064 155 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 85.000 8.85e-38 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod08g2064 HLH 3.2e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2064 08 48084605 48087309 Dod08g2064 08 48084605 48087309 ECH