LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod08g2063	ATGCAAGGACAGAGAGGTACAATTGGTTCCTTGCCTGAAACCTTAGAATTTGATTGTGGATCAACATCTAGTAGTGCCGCAGTTAATTCACAGATTTGCTGGAGTAACATGCGGAATTCTGTGGAAAATCGGATACCTGAATATATACTTCCCCCAAGTGATGTAAACCCTTCTTTTGTGACTCCTATAGACCATGGATGGCAGAACTTGAGTGGATGGAGCTTAGGTGAGCCAAGTTATATTAATACACAGAATGAGGTTAACAACAATGAGCAGAAAAGAGAACTAGGATGGTCATCTTCTATAAGTTTTGGTGCACCCAGTTCAAGACAAGAAGAACGGCACGTTGAACCAACCACTGCTGTTCCGATGTGTAATATCAATACAAATCCTATGTATACGCACAACCCAAATTCTCATTTGGTGTCCCAGAATCTCAATCTAAATGCTGGTTTGGCAGACAGCAGCACTCCTAATAGCCATCATGTGGAACATGCTAACTTGCAGTTGCACAAGTCTAGTGGGCCAGTAAATGAGCACATTCCTCCTACAATTAGTCCTGGTCCTTTGACGCTTCCTACTGGAAGTAACTTTTTGTTTGGGCATAGTGATGGTAGACCAGGTTGTTCTGTAGATACTCGCCGTGTGCCCTGTAAAAGAAAGGCCATTGAAGGAAGTGTTGGACAATCTTCGGATGGTGGGAGTTCTAGCTACAGTCAGCATACAGATGGTATTGCTTGGAATGCTCAGGATTATGTGGGGAGCAGCTTTACGAGACCTGCTTCACAAGAACAGACAAGCGCAAGCCTCGGCCTAAGTATGGGGGATGGAGCCTCTGAAAGTGCTCCTGATTCAAATGTGGCAGGAAGGTCGGAAAGCTTCCGCAGAAACTTCCGAGTAAGGATAAACCCTTCAAGCCAACAAAGCCCTGTTCTGCCCACTGCATTCTCATCTGGAAGTGTGATTAGGAATTCCGGCATTGCTTCGTCCAGTCCAATGTTGCCAAGATTTCATCCTGTTGATAATTCTTCTCCGGACTTGAGATCAGTACCACCTGTAGATAATATGATTCCTCAAAGTCAGCCCCTTCTAATTCATGTTCCGGCATTACCAGGAAATGTGCAATCAGTAAGATGGAGTGGTGCTTCTAGCTCAACAAACAACCTTTCATCTAACTCGGTTGGTAATGTAACACATGAGGAAGCAAGCTCAAGAAGTATGCCTAGAAACATTTTAGAACACCCCGTGTTCATGCCTGGAACCAATTTAAGAAATTTGGTTCGTCATCCAACAAATAGAGTGTCAAGTAGCGCAAATTTAAGTATTCCTGGAAATGTTGCTTCTTCATCGCGGACCGGATCACATCCAGCTGTCAATCCATCATCTGCCTCCTCACCATGGGTTTCTCGTCCTAATCCTCAGCACTATCCATGCAGGTTATCTGAATATGTTCGACGGTCCTTGCTTCCTCCTGGCTCTGAGGCTCCAGGAAGCTCGAGCAACAATTATTCCTCCACACGTGGTCCTGACTCAAGGGCACTGTCATCAGGGGCACAGCCGGGATTACCTTCGTGGATGGAAAGGCCAGGTGATCATGAATATGGTATTCCATATTCTTTACGATCTTTGGCTGTTGCTGGTGATGGAAGTAGTAGACTTGTATCTGAGCTCCGAAATGTGTTGGGCCTTATGCGTCGGGGCGGGAGCCTGCGCTTTGAGGATGTTATGATCCTTGATCAATCAGTGGTTTCTGGAATTGCTGATATGCATGACCGACACAGGGATATGCGACTTGATGTCGACAACATGTCATATGAGGAGTTATTGGCTTTGGAAGAGCGCATTGGAAATGTGAGTACCGGATTGAATGAGGAAACCATATTGAAACAAATGAAACAGCAGAAGTATTCAGTTGTAGTTGGATCTCAGCGTGAGGCGGTACCCTGCTGTGTTTGTCAGGAGGAGTATAACGATGGAGAGGATATCGGTTCGCTGGATTGTGGCCATGATTTCCACACCGACTGTATTAAACAGTGGCTAATGCGGAAGAATCTGTGTCCGATTTGCAAGATGACTGGTTTGGCAACAACATGA	2094	0.4537	MQGQRGTIGSLPETLEFDCGSTSSSAAVNSQICWSNMRNSVENRIPEYILPPSDVNPSFVTPIDHGWQNLSGWSLGEPSYINTQNEVNNNEQKRELGWSSSISFGAPSSRQEERHVEPTTAVPMCNINTNPMYTHNPNSHLVSQNLNLNAGLADSSTPNSHHVEHANLQLHKSSGPVNEHIPPTISPGPLTLPTGSNFLFGHSDGRPGCSVDTRRVPCKRKAIEGSVGQSSDGGSSSYSQHTDGIAWNAQDYVGSSFTRPASQEQTSASLGLSMGDGASESAPDSNVAGRSESFRRNFRVRINPSSQQSPVLPTAFSSGSVIRNSGIASSSPMLPRFHPVDNSSPDLRSVPPVDNMIPQSQPLLIHVPALPGNVQSVRWSGASSSTNNLSSNSVGNVTHEEASSRSMPRNILEHPVFMPGTNLRNLVRHPTNRVSSSANLSIPGNVASSSRTGSHPAVNPSSASSPWVSRPNPQHYPCRLSEYVRRSLLPPGSEAPGSSSNNYSSTRGPDSRALSSGAQPGLPSWMERPGDHEYGIPYSLRSLAVAGDGSSRLVSELRNVLGLMRRGGSLRFEDVMILDQSVVSGIADMHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLNEETILKQMKQQKYSVVVGSQREAVPCCVCQEEYNDGEDIGSLDCGHDFHTDCIKQWLMRKNLCPICKMTGLATT*	698

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod08g2063	697	MobiDBLite	consensus disorder prediction	378	409	-	-
	Dod08g2063	697	MobiDBLite	consensus disorder prediction	493	513	-	-
	Dod08g2063	697	MobiDBLite	consensus disorder prediction	431	472	-	-
	Dod08g2063	697	MobiDBLite	consensus disorder prediction	258	274	-	-
	Dod08g2063	697	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1	1	695	-	-
	Dod08g2063	697	MobiDBLite	consensus disorder prediction	258	291	-	-
	Dod08g2063	697	MobiDBLite	consensus disorder prediction	488	528	-	-
	Dod08g2063	697	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	613	693	IPR013083	-
	Dod08g2063	697	MobiDBLite	consensus disorder prediction	431	471	-	-
	Dod08g2063	697	MobiDBLite	consensus disorder prediction	378	405	-	-
	Dod08g2063	697	MobiDBLite	consensus disorder prediction	222	242	-	-
	Dod08g2063	697	MobiDBLite	consensus disorder prediction	228	242	-	-
	Dod08g2063	697	SMART	ring_2	649	689	IPR001841	-
	Dod08g2063	697	Pfam	Ring finger domain	649	690	IPR001841	-
	Dod08g2063	697	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF165	1	695	IPR045191	GO:0061630
	Dod08g2063	697	CDD	RING-H2_TTC3	648	690	-	-
	Dod08g2063	697	MobiDBLite	consensus disorder prediction	173	199	-	-
	Dod08g2063	697	SUPERFAMILY	RING/U-box	648	692	-	-
	Dod08g2063	697	ProSiteProfiles	Zinc finger RING-type profile.	649	690	IPR001841	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod08g2063	Dod-Chr8	48071279	48078817	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod08g2063	218	696	C3H Transcription Factor Family	AT2G15530	35.294	1.48e-71	244

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod08g2063	08	48071279	48078817	Dod08g2063	08	48071279	48078817	ECH
	Dod08g2063	08	48071279	48078817	Dod09g2099	09	42504790	42511071	PCT