Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2061 ATGGCGCAGATTCAGGTGCAGCACCAGAACGCGGTGTCAGGTCCTCCTCAAAACGGCGTCGTTTCGGCGGCAACTGCTGCGGCTGCGGCGGCGAATGCGGCACCGAACGCCGCGAACCAGTTCGTGACGACGTCGTTGTACGTTGGGGATCTGGACGCTGACGTGGACGAGAGGCACCTGTACGATCTGTTCAACCAGGTCGGGCAAGTTGTGTCGGTTAGGGTTTGCAGCGACTTGGCCACGCGCCGATCGCTCGGTTATGGTTACGTTAATTACAGTAACCCTCAGGATGCGGCAAGAGCATTGGATGTGCTGAATTTCACTCCACTGAACGGCAAGCCCATTAGGATCATGTATTCTCACCGGGATCCTAGTATTCGCAAGAGTGGTACTGCAAATATTTTTATCAAGAATTTGGATAAGGCTATTGATCACAAAGCTTTACATGAAACCTTTTCTTCTTTTGGACATATTCTTTCTTGCAAAATAGCCACTGATGCTTCTGGCCAGTCAAAAGGCTATGGTTTTGTTCAATTCGAGAATGAAGAGTCTGCGCAGAATGCAATTGATAAGTTAAATGGCATGCTGATTAATGATAAACAGGTCTATGTAGGTCAATTCCTACGAAAGCAAGATAGAGAGAATGCTTTGAGTAAGACAAAATTCAATAATGTCTATGTGAAAAACTTTTCTGAGTCAATGACAGATGACGACTTGAAGAAAATTTTTGGAGAATATGGGACGATTACTAGTGCTGTAGTAATGAGAGATGCTCATGGTAAATCAAAGTGTTTTGGTTTCGTCAATTTTGAAAACCCAGACGATGCTGCCAAAGCTGTTGAGGCGCTTAATGGAAAGAAATTTGATGAGAAGGAGTGGTATGTCGGAAAGGCCCAGAAAAAATCCGAACGAGAGCTTGAACTGAAAAGACGGTTTGAGCAGAGTATAAAGGAAGCTGTTGACAAATACCAGGGTGTGAACTTGTATCTCAAGAACTTGGACGATACCATCAATGATGAAAAGCTTAGAGAACTCTTCTCCGAGTTTGGTACTATAACCTCATGCAAGGTTATGCGAGACCCAAATGGAATCAGTAGAGGATCAGGATTTGTCTCATTTTCAACTCCTGATGAAGCATCTCGAGCTCTTGCGGAGATGAATGGTAAAATGATTGCTGGCAAACCTCTGTACGTTGCACTTGCCCAGAGGAAAGAAGAGAGAAGAGCTAGGCTGCAGGCACAATTCTCTCAAATGAGGCCTGTTGCAATTACGCCTTCTGTTGCACCTCGGTTGCCACTCTATCCACCTGGTGCTCCTGGTTTAGGGCAGCAGTTTTTGTATGGTCAAGGACCCCCTGCCATGATTCCTCCACAGGCTGGATTTGGCTACCAACAGCAACTTGTTCCTGGGATGAGACCTGGTGGTGGTCCACTGCCAAGCTTCTTTGTTCCAATGGTTCAGCAGGGTCAACAAGGCCAGCGCCCAGGCGGACGCAGAGGAGCAGGCCCTGTTCAACAACCCCAGCAGGCAGTGCCATTGATGCAGCAGCAGATGGTCCCAAGGGGACGTGTCTACCGTTACCCTCCTGGTCGCAACATGCAAGACGTCCCACTGCCAGGAGTAGGTGGAGGAATGCTGTCAGTCCCATATGACATGGGTGGTCTGCCAATCCGCGATGGCGGCGTGGGACAGCCAATGGGTATTCAGGCCTTGGCTACAGCCCTTGCAAATGCTCCTCCTGAACAGCAGAGGACTATGCTTGGTGAAGCTTTATACCCGCTTGTAGATCAGCTGGAACATGATGCTGCAGCTAAGGTTACAGGCATGCTTTTAGAGATGGATCAGCCAGAGGTCTTGCATCTGATTGAATCACCAGATGCTCTCAAGGCGAAAGTTGCTGAAGCCATGGATGTGTTGAGAAACGTTGCGCAACAGCAAGCGAACAATCCAGCTGATCAACTTGCCTCCCTATCTCTTAATGACAATCTCGTGTCTTAG 1998 0.4815 MAQIQVQHQNAVSGPPQNGVVSAATAAAAAANAAPNAANQFVTTSLYVGDLDADVDERHLYDLFNQVGQVVSVRVCSDLATRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRIMYSHRDPSIRKSGTANIFIKNLDKAIDHKALHETFSSFGHILSCKIATDASGQSKGYGFVQFENEESAQNAIDKLNGMLINDKQVYVGQFLRKQDRENALSKTKFNNVYVKNFSESMTDDDLKKIFGEYGTITSAVVMRDAHGKSKCFGFVNFENPDDAAKAVEALNGKKFDEKEWYVGKAQKKSERELELKRRFEQSIKEAVDKYQGVNLYLKNLDDTINDEKLRELFSEFGTITSCKVMRDPNGISRGSGFVSFSTPDEASRALAEMNGKMIAGKPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRLPLYPPGAPGLGQQFLYGQGPPAMIPPQAGFGYQQQLVPGMRPGGGPLPSFFVPMVQQGQQGQRPGGRRGAGPVQQPQQAVPLMQQQMVPRGRVYRYPPGRNMQDVPLPGVGGGMLSVPYDMGGLPIRDGGVGQPMGIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVAQQQANNPADQLASLSLNDNLVS* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2061 665 PANTHER RNA BINDING PROTEIN 33 649 - -
Dod08g2061 665 PANTHER POLYADENYLATE-BINDING PROTEIN 33 649 - -
Dod08g2061 665 Pfam Poly-adenylate binding protein, unique domain 575 639 IPR002004 GO:0003723
Dod08g2061 665 Gene3D - 119 205 IPR012677 -
Dod08g2061 665 Gene3D - 4 118 IPR012677 -
Dod08g2061 665 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 45 640 IPR006515 GO:0003723
Dod08g2061 665 CDD RRM2_I_PABPs 130 205 IPR045305 -
Dod08g2061 665 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 326 403 IPR000504 GO:0003723
Dod08g2061 665 SUPERFAMILY RNA-binding domain, RBD 223 407 IPR035979 GO:0003676
Dod08g2061 665 CDD RRM3_I_PABPs 222 301 - -
Dod08g2061 665 SUPERFAMILY PABC (PABP) domain 509 658 IPR036053 GO:0003723
Dod08g2061 665 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 204 IPR000504 GO:0003723
Dod08g2061 665 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 567 644 IPR002004 GO:0003723
Dod08g2061 665 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 328 396 IPR000504 GO:0003723
Dod08g2061 665 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 225 293 IPR000504 GO:0003723
Dod08g2061 665 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 202 IPR000504 GO:0003723
Dod08g2061 665 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 116 IPR000504 GO:0003723
Dod08g2061 665 CDD RRM4_I_PABPs 325 403 - -
Dod08g2061 665 Gene3D - 563 646 - -
Dod08g2061 665 SMART rrm1_1 224 296 IPR000504 GO:0003723
Dod08g2061 665 SMART rrm1_1 327 399 IPR000504 GO:0003723
Dod08g2061 665 SMART rrm1_1 133 205 IPR000504 GO:0003723
Dod08g2061 665 SMART rrm1_1 45 118 IPR000504 GO:0003723
Dod08g2061 665 SMART poly_2 579 642 IPR002004 GO:0003723
Dod08g2061 665 SUPERFAMILY RNA-binding domain, RBD 44 213 IPR035979 GO:0003676
Dod08g2061 665 CDD RRM1_I_PABPs 45 124 - -
Dod08g2061 665 Gene3D - 208 309 IPR012677 -
Dod08g2061 665 Gene3D - 310 416 IPR012677 -
Dod08g2061 665 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 300 IPR000504 GO:0003723
Dod08g2061 665 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 122 IPR000504 GO:0003723
Dod08g2061 665 SMART rrm2_1 45 118 IPR003954 GO:0003676
Dod08g2061 665 SMART rrm2_1 133 205 IPR003954 GO:0003676
Dod08g2061 665 SMART rrm2_1 224 296 IPR003954 GO:0003676
Dod08g2061 665 SMART rrm2_1 327 399 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2061 Dod-Chr8 48048000 48053446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g2061 1 660 Eukaryotic Initiation Factors Gene Family AT4G34110 67.171 0.0 873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2061 08 48048000 48053446 Dod08g2061 08 48048000 48053446 ECH