Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2058 ATGGAAGATACACATAGTTGTTCCATGAATTCAAGGATTACACGAAGCAGGAGCAGGAGTAGGAGTAGAAGCCCGACAGAAAAGAAGTCGAAGCTTCAAAGAGAGAAATCAAACAAACCCTACAGAGGGATAAGGATGAGGAAGTGGGGTAAGTGGGTGGCTGAAATAAGAGAACCTAAGAAGAGGTCAAGGATATGGCTAGGCTCTTACACCTCGCCGGTCGCCGCCGCGCGCGCCTACGACACCGCCGTGTTCTACCTGAGGGGCCCTTCAGCAAGCCTTAACTTCCCGGAATTGCTGTTCCAAGACCTAGGCAAGGAAGGTGGCCCCATGTTGCAACAACAACAACAACAACAAGGTGGTGGCATGTCTGCTGATTCCATACGCAAAAGGGCAACACAAGTTGGCGCAAGGGTGGACGCTCTCCAAACGGCCCTTCATCTCCATGCAACTTCCAACGATTGTTCAAGTACCTCTCAGAAACCTGACTTGAATGAGTTTCCTAAACCCGAAGATTCGCTTGACTCATAG 531 0.5009 MEDTHSCSMNSRITRSRSRSRSRSPTEKKSKLQREKSNKPYRGIRMRKWGKWVAEIREPKKRSRIWLGSYTSPVAAARAYDTAVFYLRGPSASLNFPELLFQDLGKEGGPMLQQQQQQQGGGMSADSIRKRATQVGARVDALQTALHLHATSNDCSSTSQKPDLNEFPKPEDSLDS* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2058 176 SUPERFAMILY DNA-binding domain 40 98 IPR016177 GO:0003677
Dod08g2058 176 Gene3D AP2/ERF domain 40 98 IPR036955 GO:0003700|GO:0006355
Dod08g2058 176 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Dod08g2058 176 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Dod08g2058 176 PRINTS Ethylene responsive element binding protein signature 79 99 IPR001471 GO:0003700|GO:0006355
Dod08g2058 176 MobiDBLite consensus disorder prediction 1 43 - -
Dod08g2058 176 CDD AP2 41 99 IPR001471 GO:0003700|GO:0006355
Dod08g2058 176 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 9 173 - -
Dod08g2058 176 Pfam AP2 domain 41 89 IPR001471 GO:0003700|GO:0006355
Dod08g2058 176 MobiDBLite consensus disorder prediction 150 176 - -
Dod08g2058 176 MobiDBLite consensus disorder prediction 20 43 - -
Dod08g2058 176 MobiDBLite consensus disorder prediction 150 164 - -
Dod08g2058 176 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Dod08g2058 176 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 9 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2058 Dod-Chr8 48019518 48020449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g2058 34 173 AP2-EREBP Transcription Factor Family AT2G23340 52.941 3.71e-48 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Dod08g2058 AP2 2e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2058 08 48019518 48020449 Dod08g2058 08 48019518 48020449 ECH