Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2057 ATGAACTCCCTCACCCTCCTCCTTCTTAACCCAAACCCAACGACACACACTCTCCACTCTCACTTCCTTAATTTCCCAACAAAACACACTCACCAACTACGATTCCAACACAAACACCAACCAAACATCATCATCAAAGCATGTTCCTCTTCCACCTCCTCGTCGATTGAAATCGACATGGTGAAGGACAACCAAGGCATCTACGCACCAAAACACGACAAAGTCGTTGTCCTGTGGGACCTCGACAACAAGCCGCCACGTGGCCCTCCATACGACGCAGCACGCTCCCTTAAGCGCGTGGCCGAGCACTTCGGCGAGGTCGTTGAGATCTCAGCGTACGCTAACCGACACGCGTTCGTGCACCTGCCTCAGTGGGTCCTACAGGAGCGCCGACAGAGGAGGCACCTCGACGTCCTCGAACGGAAAGGGGTCGCCGTACCTTCGGAACCGTACAGGTGTTCGGTGTGCGGGAGGAAGTGCAAGACGAACCTTGACCTCAAGAAGCACTTCAAGCAGTTGCACGAGAGGGAAAGGCAGAAGAAGCTGAACAGAATGAGGTCGCTGAAAGGGAAGAAGCGGCAGCGTTTTAAGGAAAGGTTCATATCGGGGAATGACAAGTATAATGAGGCTGCCAGGGCTCTGACAAGGCCCAAGGTTGGGTATGGGCTGGCTTCAGAGCTGAGGAGAGCTGGGGTGTATGTGAAGACTGTGCAGGATAAGCCTCAGGCTGCAGATTGGGCATTAAAGAAGCAGATGCAGCATTCCATGAGTAGGGGAATTGATTGGCTGGTTTTGGTTTCAGATGATTCGGATTTTACAGATATGTTGAGGAGGGCAAGGGATAGGGAATTGGGGACAGTGGTGGTTGGGGATTGGGATAGGGCGTTGGGTAGGCATGCGGATTTGTGGGTTCCTTGGATTGAGGTTGAGAATGGGGAGATTTCAGACAAGGATTTGCTGATTGCGAAAAACCGGAGCAGAACCACCAGGGGGGGTTTTGTTGTTGAAGAGGATGATGGTGGGTTGTTTTCAGTGTCAAGGTTTGATGATGGTGGTGGTGGTGATGATTTAGATGAGATTGTGGATGAACTTGTTGCAATGAGGACTGATTTTACTGTGGCATTTTCGGATGAGGATGAAGAAGACTATATGTTGGTGAGTAGTGAGGATGAGGACATACAAGATTATGGTGAAGATGATGCATTTTATTGA 1212 0.505 MNSLTLLLLNPNPTTHTLHSHFLNFPTKHTHQLRFQHKHQPNIIIKACSSSTSSSIEIDMVKDNQGIYAPKHDKVVVLWDLDNKPPRGPPYDAARSLKRVAEHFGEVVEISAYANRHAFVHLPQWVLQERRQRRHLDVLERKGVAVPSEPYRCSVCGRKCKTNLDLKKHFKQLHERERQKKLNRMRSLKGKKRQRFKERFISGNDKYNEAARALTRPKVGYGLASELRRAGVYVKTVQDKPQAADWALKKQMQHSMSRGIDWLVLVSDDSDFTDMLRRARDRELGTVVVGDWDRALGRHADLWVPWIEVENGEISDKDLLIAKNRSRTTRGGFVVEEDDGGLFSVSRFDDGGGGDDLDEIVDELVAMRTDFTVAFSDEDEEDYMLVSSEDEDIQDYGEDDAFY* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2057 403 ProSitePatterns Zinc finger C2H2 type domain signature. 153 174 IPR013087 -
Dod08g2057 403 CDD PIN_LabA-like 161 291 - -
Dod08g2057 403 PANTHER OS06G0166200 PROTEIN 42 355 - -
Dod08g2057 403 Gene3D - 68 307 - -
Dod08g2057 403 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 179 IPR013087 -
Dod08g2057 403 PANTHER - 42 355 - -
Dod08g2057 403 Coils Coil 171 191 - -
Dod08g2057 403 SMART c2h2final6 151 174 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2057 Dod-Chr8 48001339 48009870 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g2057 5 398 C2H2 Transcription Factor Family AT5G52010 59.658 2.70e-163 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod08g2057 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2057 08 48001339 48009870 Dod08g2057 08 48001339 48009870 ECH