Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2046 ATGGGTTCCATCAGATCTCCCATCACCACGATGACCCTCCTTACCATCATGCTCCTAGCCGTTTCATCGGCCATAGACATGTCCATAATCTCGTACGACAAAGACCACGACAACTCCAACACCAAGTCGTCATCATCAAGGACCGATGAAGAAATCATGGTCATGTACGAGGAGTGGTTGGTGAAACACGGGAAACTCAACAGCAACGCCCTCGGTGGTGATGAGAAGCAGAAGCGGTTCGAGATCTTCAAGGACAACCTGCGGTTCATCGATGAGCACAACAGTGTTCCGAACCGGACATATAAGCTCGGTCTGAACCGGTTCGCTGATCTGACCAACGAGGAGTACAGGGCGAAGTACTTGGGTACGAGGATCGATCCTAACCGTCGGATGAAGAGGTTGAGGAGCAGTAGCAGTGACAGATACGCGCCACGTGTCGGGGACAAGTTGCCGGAGTCCGTTGATTGGAGGAAGGAAGGTGCGGTTGTCGGAGTCAAAGACCAAGGAAGTTGTGGGAGTTGTTGGGCATTCTCAACAATTGGTGCGGTGGAAGGCATAAACAAGATTGTCACGGGTGATCTGATTTCACTATCAGAACAAGAGCTTGTTGATTGTGATACATCGTATAACGAAGGATGCAATGGTGGACTCATGGACTATGCCTTTGAGTTCATCATCAACAATGGTGGTATTGATTCCGAAGAGGATTACCCCTACACCGGTTATGATGGTACATGTGACCAAAACAGGAAAAATGCTAGAGTTGTTACTATTGATGGCTACGAAGATGTTCGTTCCTATGATGAGTTAGCCTTGAAAAAGGCTGTTGCCAATCAGCCAGTGAGTGTTGCTATCGAAGGAGGTGGCAGGGAATTCCAGTTATATGTATCCGGTTTATTTACAGGTAGATGTGGGACAGCGCTGGACCATGGTGTTGTGGCTGTTGGTTATGGCACACATAATGGTTATGACTATTGGATTGTGAGGAACTCATGGGGTCCTGATTGGGGAGAGGACGGGTATATCAGAATGGAACGTAATGTGGGAAGCAGATCAGGCAAGTGTGGCATTGCAATTGAGCCATCTTACCCCATTAAGACTGGACCAAATCCCCCAAACCCAGGACCATCACCCCCAACACCTGTGAAGCCGCCATCCGTGTGCGATAACTACTACAGCTGTGACTCGGGTGCTACTTGCTGCTGCATTTTTGAGATTGGAAACAGTTGCTTTGACTGGGGATGCTGCCCTCTTGAGTCTGCTACCTGCTGTGAAGACCACTACAGTTGCTGCCCACATGACTATCCCATTTGTAACGTTTATCAAGGAATCTGTCTCAGGGTATGGCTAAGACCATCTAATTTTTTTTATCTGCTTGCATTGCTACATGGATTTCATTTGGAACTAATTGTTAGCTCTAGCGTAAATTTTTCATTGATCATGATGTCATTGACAGAAGAAAATCAAGAAAAACTAAAGGTGAAATTATTAAGAGATTTAGATCTTAATGGTTTAAATATAAATTTGGTTTATGGTAGAATAATAATGAGTCTCAATGTAAGGGTAAGATTGTTGTCTTGCGATTAG 1587 0.4575 MGSIRSPITTMTLLTIMLLAVSSAIDMSIISYDKDHDNSNTKSSSSRTDEEIMVMYEEWLVKHGKLNSNALGGDEKQKRFEIFKDNLRFIDEHNSVPNRTYKLGLNRFADLTNEEYRAKYLGTRIDPNRRMKRLRSSSSDRYAPRVGDKLPESVDWRKEGAVVGVKDQGSCGSCWAFSTIGAVEGINKIVTGDLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIINNGGIDSEEDYPYTGYDGTCDQNRKNARVVTIDGYEDVRSYDELALKKAVANQPVSVAIEGGGREFQLYVSGLFTGRCGTALDHGVVAVGYGTHNGYDYWIVRNSWGPDWGEDGYIRMERNVGSRSGKCGIAIEPSYPIKTGPNPPNPGPSPPTPVKPPSVCDNYYSCDSGATCCCIFEIGNSCFDWGCCPLESATCCEDHYSCCPHDYPICNVYQGICLRVWLRPSNFFYLLALLHGFHLELIVSSSVNFSLIMMSLTEENQEKLKVKLLRDLDLNGLNINLVYGRIIMSLNVRVRLLSCD* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2046 528 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 325 344 IPR025661 -
Dod08g2046 528 Pfam Granulin 399 446 IPR000118 -
Dod08g2046 528 SMART GRAN_2 388 445 IPR000118 -
Dod08g2046 528 Gene3D Granulin 385 448 IPR037277 -
Dod08g2046 528 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 36 395 - -
Dod08g2046 528 SUPERFAMILY Cysteine proteinases 48 365 IPR038765 -
Dod08g2046 528 SUPERFAMILY Granulin repeat 385 419 - -
Dod08g2046 528 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 168 179 IPR000169 -
Dod08g2046 528 SMART Inhibitor_I29_2 56 116 IPR013201 -
Dod08g2046 528 PANTHER CYSTEINE PROTEASE 36 395 - -
Dod08g2046 528 SMART pept_c1 150 365 IPR000668 GO:0006508|GO:0008234
Dod08g2046 528 Gene3D Cysteine proteinases 23 367 - -
Dod08g2046 528 PRINTS Papain cysteine protease (C1) family signature 168 183 IPR000668 GO:0006508|GO:0008234
Dod08g2046 528 PRINTS Papain cysteine protease (C1) family signature 310 320 IPR000668 GO:0006508|GO:0008234
Dod08g2046 528 PRINTS Papain cysteine protease (C1) family signature 325 331 IPR000668 GO:0006508|GO:0008234
Dod08g2046 528 Pfam Papain family cysteine protease 150 365 IPR000668 GO:0006508|GO:0008234
Dod08g2046 528 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 308 318 IPR025660 -
Dod08g2046 528 CDD Peptidase_C1A 151 364 IPR039417 -
Dod08g2046 528 Pfam Cathepsin propeptide inhibitor domain (I29) 56 116 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2046 Dod-Chr8 47814637 47820052 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2046 08 47814637 47820052 Dod05g1100 05 30624861 30628046 ECH
Dod08g2046 08 47814637 47820052 Dod06g0081 06 1071225 1074468 ECH
Dod08g2046 08 47814637 47820052 Dod08g2046 08 47814637 47820052 ECH
Dod08g2046 08 47814637 47820052 Dod09g2081 09 42340419 42344971 PCT