Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2033 ATGGCGTCTAGCAAGGAAGTCGATCGGATTAAGGGCCCGTGGAGCCCGGACGAGGATGAATTACTGAGAAGCCTGGTTGAGGCCCTCGGGCCGCGAAACTGGACTGTCATAAGCAAGTCCATTCCGGGCCGATCCGGCAAGTCGTGCCGTCTACGGTGGTGCAACCAGCTGTCTCCGGAGGTGGAGCACCGCCCCTTCACGGCGGAGGAGGACGATGCCATAATAAAAGCCCATTCCAGATACGGAAACAAGTGGGCCACAATAGCCCGTTTACTTAACGGCAGGACGGATAACGCCGTCAAGAATCACTGGAACTCCACACTCAAGAGAAAATGTTCTGACGTTGACGCCGTTACGGTTGCCGTTTACCCTGAAGCCCGGCCACTTAAAAGAACAGCCAGCGGGCCCGGAAGCCCTTCAGGATCTTCCGAATTGAGCGATGATCCGCCGCCAATAACAACGTTGTTGAGCTTGTCCCTGCCGGGATCGGATGATTCGCCGAAGGACGAGTCTGGGCCTGGGTCGAGCCGGGTTTCGGATTCAGGCCCTGCCCAACAGGCCCAGTTTTTCAGCTCGGAGTTCTTGGCCGTGATGCAGGAGATGGTGAAGAAGGAAGTGAGGAGTTACATGTCGATGATGATGGTGGACGAGCGGAACGGGTTTCGTTTGCAGCAGACGGAAGCGATTCGGAACGGTGTCATGAAACGCATGGGAATTAGGAACGCGGAGTAG 732 0.5642 MASSKEVDRIKGPWSPDEDELLRSLVEALGPRNWTVISKSIPGRSGKSCRLRWCNQLSPEVEHRPFTAEEDDAIIKAHSRYGNKWATIARLLNGRTDNAVKNHWNSTLKRKCSDVDAVTVAVYPEARPLKRTASGPGSPSGSSELSDDPPPITTLLSLSLPGSDDSPKDESGPGSSRVSDSGPAQQAQFFSSEFLAVMQEMVKKEVRSYMSMMMVDERNGFRLQQTEAIRNGVMKRMGIRNAE* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2033 243 CDD SANT 65 108 IPR001005 -
Dod08g2033 243 PANTHER MYB PROTEIN-RELATED 8 142 - -
Dod08g2033 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Dod08g2033 243 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 8 142 - -
Dod08g2033 243 Gene3D - 64 121 - -
Dod08g2033 243 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Dod08g2033 243 SMART sant 62 110 IPR001005 -
Dod08g2033 243 SMART sant 10 59 IPR001005 -
Dod08g2033 243 ProSiteProfiles Myb-like domain profile. 6 57 IPR001005 -
Dod08g2033 243 Gene3D - 10 62 - -
Dod08g2033 243 Pfam Myb-like DNA-binding domain 11 57 IPR001005 -
Dod08g2033 243 Pfam Myb-like DNA-binding domain 65 107 IPR001005 -
Dod08g2033 243 MobiDBLite consensus disorder prediction 128 184 - -
Dod08g2033 243 MobiDBLite consensus disorder prediction 135 161 - -
Dod08g2033 243 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Dod08g2033 243 CDD SANT 13 55 IPR001005 -
Dod08g2033 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 57 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2033 Dod-Chr8 47631129 47632268 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g2033 8 243 MYB Transcription Factor Family AT5G67300 46.580 2.41e-76 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod08g2033 Myb_DNA-binding 4.8e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2033 08 47631129 47632268 Dod02g0750 02 9727186 9728208 ECH
Dod08g2033 08 47631129 47632268 Dod05g1111 05 31165847 31168104 ECH
Dod08g2033 08 47631129 47632268 Dod08g2033 08 47631129 47632268 ECH
Dod08g2033 08 47631129 47632268 Dod09g2075 09 42238803 42240686 PCT