Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2029 ATGGCCCACCAAGAGAACTCCACGCGCCCTCAACGCGAGGCCAAGAAGAGGGCCGCAGCTGCACTTTCCGAGCTCCACAGCGGCGCGTCCAAGAAAAAGCGCGTCGTCTTGGGCGAGCTCACAAACCTCAACTCCACCACCACCACCAACAACAACAACGTTGCACCACCACCACCACCGCCACCGGCCAAGCCAGTTCCCGGTAACAAAGCGTTTCACCAGAAAACAAGAGCCAAGAAGAGAACGGTTGATGGGAAAAAACCGAAACCGGCGACTCCGCCGGAAAACGCGGTCACCAAGTTGGAAGGGAATAATGCTGTTGTCGTTGACCCTCAATTATGTGTACCTTACGTTTCTGATATCTACGACTATCTCCGCAAATTGGAGGTGGATCCGGGTAAGAGGCCATTACCTGATTACGTGCAGAAGGTGCAGAGGGATGTGAATGCCAACATGAGAGGTGTTCTTGTGGATTGGTTGGTCGAGGTTGCCGAGGAATACAAGCTTGTTTCCGACACCCTCTACTTCTCTGTCTCCTACATTGATAGATTCTTGTCTTTGAATGCCTTGTCCAGACAGAAGCTGCAGTTGCTTGGTGTTTCATCCATGCTCATTGCCTCAAAATATGAGGAGATAAAGCCACCTGAAGTGGAAGATTTTTGTTACATTACAGACAACACATACACCAAAGATCAGGTTGTGGAGATGGAAGCTGATATATTGAAGGCTTTGAAGTTTGAATTGGGTGGTCCTACAGTAAAAACATTCTTAAGAAGATTTTCTAAAGTTGGTCACGAGAGTAATGATACTTCTGACTTGCAATTTGAGTTTCTCAGCTGCTACCTTGCAGAGCTCAGTTTGTTGGATTATAATTGTGTAAAGTTCTTGCCTTCTTTGGTGGCTGCATCCGTTGTATTTCTAGCAAGATTTATGTTAAAACCGAAGACACATCCTTGGAATTCAGCGCTCCATCAGCTCACCAGATATACACCTGCTGAATTGAAGGAATGTGTATTAAATATCCATGACCTGTACCTCAGCAGGAGAGGAGGCTCTTTGCAAGCTGTGAGAGAGAAATACAAACAGCATAAGTTCAAATGCGTGGCAATAACACCCTCACCTCCTGAGATACCTCTTTCCTATTTTGAATCTAGAGTGACAGATACTTAG 1170 0.4641 MAHQENSTRPQREAKKRAAAALSELHSGASKKKRVVLGELTNLNSTTTTNNNNVAPPPPPPPAKPVPGNKAFHQKTRAKKRTVDGKKPKPATPPENAVTKLEGNNAVVVDPQLCVPYVSDIYDYLRKLEVDPGKRPLPDYVQKVQRDVNANMRGVLVDWLVEVAEEYKLVSDTLYFSVSYIDRFLSLNALSRQKLQLLGVSSMLIASKYEEIKPPEVEDFCYITDNTYTKDQVVEMEADILKALKFELGGPTVKTFLRRFSKVGHESNDTSDLQFEFLSCYLAELSLLDYNCVKFLPSLVAASVVFLARFMLKPKTHPWNSALHQLTRYTPAELKECVLNIHDLYLSRRGGSLQAVREKYKQHKFKCVAITPSPPEIPLSYFESRVTDT* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2029 389 CDD CYCLIN 251 342 IPR013763 -
Dod08g2029 389 ProSitePatterns Cyclins signature. 153 184 IPR006671 -
Dod08g2029 389 Gene3D - 136 249 - -
Dod08g2029 389 MobiDBLite consensus disorder prediction 1 20 - -
Dod08g2029 389 PANTHER CYCLINS 22 385 IPR039361 -
Dod08g2029 389 MobiDBLite consensus disorder prediction 53 67 - -
Dod08g2029 389 Pfam Cyclin, C-terminal domain 251 373 IPR004367 -
Dod08g2029 389 Gene3D - 120 369 - -
Dod08g2029 389 SUPERFAMILY Cyclin-like 110 248 IPR036915 -
Dod08g2029 389 CDD CYCLIN 152 241 IPR013763 -
Dod08g2029 389 Pfam Cyclin, N-terminal domain 120 248 IPR006671 -
Dod08g2029 389 SMART cyclin_7 255 343 IPR013763 -
Dod08g2029 389 SMART cyclin_7 158 242 IPR013763 -
Dod08g2029 389 SUPERFAMILY Cyclin-like 251 376 IPR036915 -
Dod08g2029 389 PIRSF Cyclin_A_B_D_E 1 381 IPR039361 -
Dod08g2029 389 MobiDBLite consensus disorder prediction 1 98 - -
Dod08g2029 389 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 22 385 - -
Dod08g2029 389 SMART Cyclin_C_2 251 374 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2029 Dod-Chr8 47596218 47599705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g2029 1 383 Core Cell Cycle Gene Families AT1G47230 57.031 2.96e-151 430
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2029 08 47596218 47599705 Dod08g2029 08 47596218 47599705 ECH
Dod08g2029 08 47596218 47599705 Dod09g2067 09 42160911 42162646 PCT