Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2013 ATGGCGCTTGAAGCTCTCAACTCTCCGACCGCCTCCGGCACATCCCTTGCCTTCGACAGCCCGACGCTCCTCCACCACCGCCGCCACCTCGAGCCGTGGATGAAAAGGAAGCGTTCCAAACGCAGTTCCTCCAACCTCCACCACAACATCCACCCTTCATGCACCGAGGAAGAGTACCTCGCACTCTGCCTCATCATGCTCGCTCGCGGCCCCACCACCATTCCTCCGCCGCAACCAACCACCGTAACAGATTGCTCGGCCGCCACAAAACTCAGCTACAAATGCTCCGTTTGCAACAAAGCCTTCCCCTCTTACCAAGCTTTAGGTGGACACAAGGCAAGTCACAGGAAAACCTCCGCCGAAGATCACTCCACCTCAACCTCCGCCGCCACCACAAGCTCAGCCACTACCGCCGCTGGAGTAGCCGCCTCCGGCGGCAAGTCGCATGAGTGTTCGATTTGTCACAAGTCTTTCCCCACCGGACAAGCCTTGGGCGGACACAAGCGGTGCCACTACGACGGAGGCGCTGCCGCCAGCAACGGCGGAGTCACGGCTGAGGAAGGAGTGGGGTCCACGCACACCGTCGCAGCGAGCCACCAGCAGCGCGGCTTCGACCTGAACATCCCGGCTTTTCCGGACTACTCGAGAGATGAGGAGGTGGAGAGTCCTCACCCTGTGTTGAAGAAGCCTCGCGTTTTCGTGTTGCCAAAGATCGAAATCCCTCACATCCAATGA 735 0.5986 MALEALNSPTASGTSLAFDSPTLLHHRRHLEPWMKRKRSKRSSSNLHHNIHPSCTEEEYLALCLIMLARGPTTIPPPQPTTVTDCSAATKLSYKCSVCNKAFPSYQALGGHKASHRKTSAEDHSTSTSAATTSSATTAAGVAASGGKSHECSICHKSFPTGQALGGHKRCHYDGGAAASNGGVTAEEGVGSTHTVAASHQQRGFDLNIPAFPDYSRDEEVESPHPVLKKPRVFVLPKIEIPHIQ* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2013 244 ProSiteProfiles Zinc finger C2H2 type domain profile. 149 171 IPR013087 -
Dod08g2013 244 MobiDBLite consensus disorder prediction 113 136 - -
Dod08g2013 244 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 235 IPR044653 GO:0003700
Dod08g2013 244 SUPERFAMILY beta-beta-alpha zinc fingers 93 171 IPR036236 -
Dod08g2013 244 Pfam C2H2-type zinc finger 93 117 - -
Dod08g2013 244 Pfam C2H2-type zinc finger 149 173 - -
Dod08g2013 244 Gene3D Classic Zinc Finger 90 171 - -
Dod08g2013 244 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Dod08g2013 244 ProSitePatterns Zinc finger C2H2 type domain signature. 151 171 IPR013087 -
Dod08g2013 244 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Dod08g2013 244 PANTHER ZINC FINGER PROTEIN ZAT10 1 235 - -
Dod08g2013 244 SMART c2h2final6 149 171 IPR013087 -
Dod08g2013 244 SMART c2h2final6 93 115 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2013 Dod-Chr8 47345578 47347157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g2013 1 240 C2H2 Transcription Factor Family AT1G27730 52.049 4.66e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod08g2013 zf-C2H2_6 1.5e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2013 08 47345578 47347157 Dod08g2013 08 47345578 47347157 ECH
Dod08g2013 08 47345578 47347157 Dod09g2052 09 42031775 42033372 PCT