Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2012 ATGGAATCTCTAGGAGCCTTCCCTAATGGAGAATGGGACTTCTTTGGCCAATTGTTTGCCACTGAAGAGAATGAATTCACTCCACAATTTCTTGGTCAAAGTTCACTTCTTCTTGGAGATGATGATGGATTGAACATTGGATTAATACAATCCACATTTTGCTCATCAGCTCCTGAAGAAGCTAGTGAAAATGAGCACATGTTTTGTTCTTTATCAAGTGCTGATGACAACTCAAATTTGCAATACATTTCTCAAGGAAGTAGTTATAATAGTAGCAATTGTAGTGAAGACAACGTCTTCATTGCCAATCATCAGGGTCTTACCACAAACTTTTATTATAGTTACCCTGATCATGTGCTAGCAAATGATGCCTCTATATCCATGGATTTTTGCATGGATGAGAAAAACCATGCCTCTTTTTTTCCGTCACTGAGTGACATTGTAATGAAAGAGAGTGTCAACTTCAGTGAAGATGTGGGAAGTGACAGATTGGAGAACTCTGATCACACTCAAATGGAACCTATGGTTTCTCCAACCAAGCAGTTGCAGCTCAAAAGGAAGCTTGAAGTGCCAGAAGAGATGCCTGCTGAAGATAAAGCAAACAACAGATCCAATAATCAGAAGAAAAAACCTTGTGCTTTAAAAGATGTGCAAGGATGCATGAAAAATGCACGGTCCAGGAAGAATAATAATCATAAAGTTGCTGGAAATAGGAATGAGGCAAAGAGACTTCTCATGCAGGATCAGATGGACAAAGCTCTAGTTGCAACATCTCTGAGGATGATAATGCTTCTCAGGAAAATAGTACTGGAGGAGCAACTTCGGTATCCAAATCAGCTCCTAACTCAAATGGAAAACCAAGAGCTAGCAGGGGATCAGCAACAGATCCCCAAAGTCTATATGCAAGGGGTACTTATTCTCTTTTTGAATCTCTTGCAGAAACGAAGGGAGAGAATAAATGAGAGACTAAGAATCTTGCAGAATCTTGTCCCAAATGGAACAAAGGTTGATATTAGCACAATGCTTGAAGAGGCAGTCAATTACGTGAAATTTTTGCAGCTCCAAATCAAGCTTTTGAGCTCTGATGATTTGTGGATGTATGCTCCTCTTGCTTATAATGGCCTTGACGTTGGACTCAATCTCAACATGAAGAATTCTCTCTGA 1164 0.3969 MESLGAFPNGEWDFFGQLFATEENEFTPQFLGQSSLLLGDDDGLNIGLIQSTFCSSAPEEASENEHMFCSLSSADDNSNLQYISQGSSYNSSNCSEDNVFIANHQGLTTNFYYSYPDHVLANDASISMDFCMDEKNHASFFPSLSDIVMKESVNFSEDVGSDRLENSDHTQMEPMVSPTKQLQLKRKLEVPEEMPAEDKANNRSNNQKKKPCALKDVQGCMKNARSRKNNNHKVAGNRNEAKRLLMQDQMDKALVATSLRMIMLLRKIVLEEQLRYPNQLLTQMENQELAGDQQQIPKVYMQGVLILFLNLLQKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQLQIKLLSSDDLWMYAPLAYNGLDVGLNLNMKNSL* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2012 387 Pfam Helix-loop-helix DNA-binding domain 313 353 IPR011598 GO:0046983
Dod08g2012 387 Gene3D - 312 366 IPR036638 GO:0046983
Dod08g2012 387 MobiDBLite consensus disorder prediction 185 205 - -
Dod08g2012 387 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 3 238 - -
Dod08g2012 387 CDD bHLH_AtIND_like 314 366 - -
Dod08g2012 387 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 314 386 - -
Dod08g2012 387 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 314 386 - -
Dod08g2012 387 MobiDBLite consensus disorder prediction 158 211 - -
Dod08g2012 387 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 313 367 IPR036638 GO:0046983
Dod08g2012 387 Coils Coil 309 329 - -
Dod08g2012 387 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 303 352 IPR011598 GO:0046983
Dod08g2012 387 SMART finulus 310 358 IPR011598 GO:0046983
Dod08g2012 387 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 3 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2012 Dod-Chr8 47315966 47318185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g2012 311 383 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 86.301 3.51e-39 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod08g2012 HLH 5.2e-08 No_clan