Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2006 ATGGGAACAGAGTCCCCCGCGAATTACTCCTACTTGGGGCGCAGCATCAGCGAGCTCAGCATCACCGACGAATCCTCCTCCTCCGCCTTCAGCGACTGCAACAGCGACAGATCCGGCGAATTCTCCTCCGCGTCATCCCAGACGCGCCGCCTCATACTCGCCTGCGCCGCCGACAACTCCGGCGACTTCATCCGCCAGCTCGTCGCCGATCTCGCCTCCGACTCCGTCGACGAGCAGAAACAAGCCGCCATGGAGATCCGCCTCCTCGCGAAGAACAAACCTGAGAACCGAATCAAAATCGCGAAGGAAGGCGCGATCAAACCCCTGATTTCGCTGATTTCGTCGCAGGACCTTCAGTTGCAGGAATACGGCGTCACCGCGATCCTGAACCTCTCGCTTTGCGACGAGAACAAGGACGTGATCGCTTCCTCCGGTGCGATTCGGCCTCTGGTGAGGGCGCTGAGCTCGGGAACCTCGGCGGCGAAGGAGAACGCCGCGTGCGCCCTTCTCCGCCTGTCTCAGGTGGAGGAGCACAAGCCGGCGATAGGTAGGGCCGGCGCGATTCCGCCGCTCGTCAAGCTTCTAGCAACCGGCGGCTTCCGCGGCAAGAAGGACGCCTCAACGGCACTGTACTCACTCTGCTCTACCGTCAAAGAGAACAAGGTGAGGGCGGTGAAGGCGGGGATAATGAAGGTGCTGGTGGAGCTGATGGCGGACTTCGAGTCGGACATGGTGGACAAGTCGTTGTACGTGGCGAGCGTGGTGGTGACGGTGGCGGAGGCGAGGGCGGCGCTGGTGGAGGAGGGAGGGATCCCGGTGCTGGTGGAGATCGTGGAGGTTGGGTCGCAGAGGCAGAAGGAGGTCGCGGTGGTTATCCTCTTGCAGGTTTGCGAGGACAGTGCCGTCTATCGCACCATGGTGGCTCGCGAAGGCGCGATCCCTGCCTTGGTTGCCCTGTCGCAATCCGGCACCAATCGAGCCAAACAAAAGGTCAGCAAAAGAAATAAAAGATTAAAAAAAAAAAAAATTCCCTGTGTGCTCTTGTGGAATTCTTCACTACTTCTTCCAATCAGAATTTTCGGTGTTCAGGTCAATTCTACTATTCTTGTTTTTTGGCTGACGTGGCACGGTGTTCTTAGTTTTTCAAATCACTCTAAACATAGATGA 1167 0.5784 MGTESPANYSYLGRSISELSITDESSSSAFSDCNSDRSGEFSSASSQTRRLILACAADNSGDFIRQLVADLASDSVDEQKQAAMEIRLLAKNKPENRIKIAKEGAIKPLISLISSQDLQLQEYGVTAILNLSLCDENKDVIASSGAIRPLVRALSSGTSAAKENAACALLRLSQVEEHKPAIGRAGAIPPLVKLLATGGFRGKKDASTALYSLCSTVKENKVRAVKAGIMKVLVELMADFESDMVDKSLYVASVVVTVAEARAALVEEGGIPVLVEIVEVGSQRQKEVAVVILLQVCEDSAVYRTMVAREGAIPALVALSQSGTNRAKQKVSKRNKRLKKKKIPCVLLWNSSLLLPIRIFGVQVNSTILVFWLTWHGVLSFSNHSKHR* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2006 388 SMART arm_5 257 298 IPR000225 GO:0005515
Dod08g2006 388 SMART arm_5 93 133 IPR000225 GO:0005515
Dod08g2006 388 SMART arm_5 134 174 IPR000225 GO:0005515
Dod08g2006 388 SMART arm_5 299 353 IPR000225 GO:0005515
Dod08g2006 388 SMART arm_5 175 215 IPR000225 GO:0005515
Dod08g2006 388 Pfam Armadillo/beta-catenin-like repeat 177 215 IPR000225 GO:0005515
Dod08g2006 388 Pfam Armadillo/beta-catenin-like repeat 94 132 IPR000225 GO:0005515
Dod08g2006 388 Pfam Armadillo/beta-catenin-like repeat 135 173 IPR000225 GO:0005515
Dod08g2006 388 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 104 146 IPR000225 GO:0005515
Dod08g2006 388 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 1 333 - -
Dod08g2006 388 PANTHER U BOX DOMAIN-CONTAINING 1 333 - -
Dod08g2006 388 SUPERFAMILY ARM repeat 61 329 IPR016024 -
Dod08g2006 388 Gene3D - 26 199 IPR011989 -
Dod08g2006 388 Gene3D - 201 342 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2006 Dod-Chr8 47266132 47269086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g2006 14 337 U-box Gene Family AT2G23140 45.946 2.77e-78 251
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2006 08 47266132 47269086 Dod09g2046 09 41979516 41982261 PCT