Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2003 ATGTTGTGTGCTTGCTCAGGGGAACAGTTCAAATTTGAGGAGGCGCCACAGTCACCACCAGAGTCCTTGGCAACAAGGGATTTCTCTGCAAGTGGACTTTCTTCAAGAACTGGGGATTGGGAATCCAAGTTTGATGAAAACCAAGTAGAAGAGGCTGAATCAACCCTAAAAGAAGCTCTCTCATTAAACTATGAGGAAGCTAGGGCCTTGTTGGGGAGGCTTGAATATCAAAGAGGGAACTTTGGTTCTGCCCTTCAAGTGTTTCAGGGTATTGACATCAAGGCTTTGACCCCAAGGATGATCAGGGCTATTACTGAAAGAACTAAGCAAAGAAAGCCACGTTCCAAGGCAGATAATGTGCTTCTTAATGTGATGTCAATGCATTCTGTAAGCCTGCTTGTTGAGGCGATTTTGCTTAAATCCAAATCCTTGGAGGAACTTGGGCGATACACTGAGGCTGCAAAGGAGTGCAGCATAATTCTGGATACAGTTGAGTCTGCTCTTCCTAATGGAATGACTGAGGGTATTGCTGAGGAGTGTAAGTTGCAAGAAATGCTCCATAGAGCATTGGAGTTGCTTCCAAATTTATGGATCAAGGCAGGAATTATAGATGATGCTGTTGCAGCTTATCGGCGAGCTTTGGTCAAGCCCTGGAACTTGGAGCCACGAAAGTTGGCCGGTGTACAAAAGGATTTAGCTATCACACTACTCTATTGTGGTGTTGAAGTAAACCTACCCCCTCAATTGCAAGTGAGGTATCCAACAACACCTAAGAGTAACACTGAAGAAGCAATACTTTTGCTATTAATACTCATGAGAAAGATGGTGCTTCAGGAAATAGACTGGGATGCCGAAATAGTGGATCATCTTACATTTGCACTTTCGGTTACTGGGATGTTTAAATCATTAGCAGATCATGTAGAGCAGATCCTTCCTGGAATCTATGATCGAGCTGAGAGGTGGTACTCTCTTGCTCTTTGTTACAGTGCAGCAGGTAACAATGAAGCAGCCTTGAATCTTTTGAGAAAGTCTTGTGGTAATTCTGAATCAAAGCATAGACCCCATTTTCCTTCATTTTTGTTTGGTGCGAAATTGTGTTCAGAATATCCAAACCATGCTCATGAAGGTATTAAATTTTCACGAGAAGTTATTGATCTAGCCAAGCATAAAAATGAGCATTTTTTGGGTCAAGGCAAAAAATTTCTTGGTGTGTGCTATGGTGCTGCAGCTAGAATGTCTGTACTGGATTCTGAAAGGATTATATTTCAAAGGGAGTCTTTGAACTTTCTAAATGAGGCTGCTCTAACTGGAAACGATGATCCGGAAGCAATATTCAACCTTGGATTGGAAAATGCAATTCAAAGGAATCTAGATGCAGCTTATGACAATATAATGATGTACTCAGACATGACAGTTGGTGGCTCGAAAAGAGGTTGGCAGCTGTTAACACTCATAGTATCGGCGCAGCAGCGGTTTAAGGATGCGGAAACTATAGTTGATTTTGCTTTAGATGAGACTGAAAGGATAGATCAATTAGAACTTCTAAGATTGAAAGCTGCGCTTCAAATTGCTCAGCAGAGACCCAAGCAAGCAATAGAGACCTACAGTGTCTTGTTAGCACTAATTCAAGCAAAAAAGGAGCTTTGGCATCAAGCTAAGAACATTCACGAAGCAAAATCATTCAGACATGAGGAAGTAACAGAAAGGAAGTTGGAAATGGAAGCCTGGCAGGATTTGGCTACCATCTATGCAGATGTCAGTTCCTTTCTTGATGCAAAAGCGTGTGTTGACAAAGCTCAGTTGATAGAATTTTTTTCTCCCAGAAGTTGGCATATTACAGGGATGTTATTTGAAGCTCAATCATTACATAAGGAGGCCTTTGTTTCCTTCTCAATCTCATTGTCAATAGAACCTGATTACATTCCCAGTATCATTTCATCTGCAGAATTATTGCTTAAACTTGGTATGCAATCACTACCAATTGCAAGAAGCTTTTTGATGAATGCCTTGAGAATAGAACCAACAAACCATGATGCATGGTTCAACCTTGGATTGGTTTCAAAAATGGAAGGTTCATTACAACAAGCAGCAGATTTCTTTCAAGCTGCATATGAGCTTAAGCTTTCAGCTCCAGTGCAAAAATTTGAGTAA 2151 0.411 MLCACSGEQFKFEEAPQSPPESLATRDFSASGLSSRTGDWESKFDENQVEEAESTLKEALSLNYEEARALLGRLEYQRGNFGSALQVFQGIDIKALTPRMIRAITERTKQRKPRSKADNVLLNVMSMHSVSLLVEAILLKSKSLEELGRYTEAAKECSIILDTVESALPNGMTEGIAEECKLQEMLHRALELLPNLWIKAGIIDDAVAAYRRALVKPWNLEPRKLAGVQKDLAITLLYCGVEVNLPPQLQVRYPTTPKSNTEEAILLLLILMRKMVLQEIDWDAEIVDHLTFALSVTGMFKSLADHVEQILPGIYDRAERWYSLALCYSAAGNNEAALNLLRKSCGNSESKHRPHFPSFLFGAKLCSEYPNHAHEGIKFSREVIDLAKHKNEHFLGQGKKFLGVCYGAAARMSVLDSERIIFQRESLNFLNEAALTGNDDPEAIFNLGLENAIQRNLDAAYDNIMMYSDMTVGGSKRGWQLLTLIVSAQQRFKDAETIVDFALDETERIDQLELLRLKAALQIAQQRPKQAIETYSVLLALIQAKKELWHQAKNIHEAKSFRHEEVTERKLEMEAWQDLATIYADVSSFLDAKACVDKAQLIEFFSPRSWHITGMLFEAQSLHKEAFVSFSISLSIEPDYIPSIISSAELLLKLGMQSLPIARSFLMNALRIEPTNHDAWFNLGLVSKMEGSLQQAADFFQAAYELKLSAPVQKFE* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2003 716 Coils Coil 57 77 - -
Dod08g2003 716 SUPERFAMILY TPR-like 47 463 IPR011990 GO:0005515
Dod08g2003 716 MobiDBLite consensus disorder prediction 14 41 - -
Dod08g2003 716 Gene3D Tetratricopeptide repeat domain 258 463 IPR011990 GO:0005515
Dod08g2003 716 Gene3D Tetratricopeptide repeat domain 464 713 IPR011990 GO:0005515
Dod08g2003 716 Pfam Tetratricopeptide repeat 44 90 - -
Dod08g2003 716 SMART tpr_5 607 640 IPR019734 GO:0005515
Dod08g2003 716 SMART tpr_5 677 710 IPR019734 GO:0005515
Dod08g2003 716 SMART tpr_5 318 351 IPR019734 GO:0005515
Dod08g2003 716 MobiDBLite consensus disorder prediction 22 38 - -
Dod08g2003 716 ProSiteProfiles TPR repeat profile. 677 710 IPR019734 GO:0005515
Dod08g2003 716 Gene3D Tetratricopeptide repeat domain 41 215 IPR011990 GO:0005515
Dod08g2003 716 PANTHER PROTEIN NPGR1 1 715 - -
Dod08g2003 716 SUPERFAMILY TPR-like 135 345 IPR011990 GO:0005515
Dod08g2003 716 PANTHER PROTEIN NPG1 1 715 IPR043376 -
Dod08g2003 716 SUPERFAMILY TPR-like 574 707 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2003 Dod-Chr8 47164180 47169105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g2003 1 715 Calmodulin-binding Proteins AT1G27460 58.832 0.0 844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2003 08 47164180 47169105 Dod08g2003 08 47164180 47169105 ECH
Dod08g2003 08 47164180 47169105 Dod09g2041 09 41909449 41912967 PCT