Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1998 ATGGCATTTGCAGGAACAACTCAAAAGTGTATGGCTTGTGACAAAACAGTGTATCTGGTTGATAAGTTGACTGCAGATAACCGAGTGTATCACAAAGCTTGCTTCAGATGTCACCATTGCAAAGGAACCCTCAAGCTTAGCAACTACAACTCTTTTGAGGGAGTTCTTTACTGCAGACCACACTTCGATCAACTTTTCAAAAGAACTGGTAGCCTTGACAAAAGCTTCGAAGGGACACCAAAAATTGCTAAACCAGAAAAAACAAGCGATATAGAGAAACCTGCAGCAGCAAAAGCCTCTAGTATGTTTGGTGGAACCAGGGATAAATGTGCTGGTTGCCAGAAAACGGTGTATCCCACAGAGAAGGTTACTGTGAATGGAACTCCATACCACAAGAGTTGTTTCAAATGCTGCCATGGAGGGTGTGTTATCAGTCCTTCCAATTACATTGCACATGAAGGAAAACTCTACTGCAAACACCACCATATCCAGCTGATCAAGGAGAAGGGCAACTTAAGCCAGCTTGAAGGTGACAGTGAGAAGAGTGCAGTGCAAGGAAAAATCAATGGTGAAGAAATTGCTGCCGAGACATGA 594 0.4327 MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIAKPEKTSDIEKPAAAKASSMFGGTRDKCAGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCVISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGDSEKSAVQGKINGEEIAAET* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1998 197 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Dod08g1998 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Dod08g1998 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Dod08g1998 197 SMART lim_4 109 161 IPR001781 -
Dod08g1998 197 SMART lim_4 9 61 IPR001781 -
Dod08g1998 197 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Dod08g1998 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Dod08g1998 197 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Dod08g1998 197 Gene3D Cysteine Rich Protein 105 174 - -
Dod08g1998 197 Gene3D Cysteine Rich Protein 4 74 - -
Dod08g1998 197 PANTHER OS06G0237300 PROTEIN 1 183 IPR045268 GO:0051015
Dod08g1998 197 CDD LIM2_SF3 110 170 - -
Dod08g1998 197 CDD LIM1_SF3 6 68 - -
Dod08g1998 197 Pfam LIM domain 110 164 IPR001781 -
Dod08g1998 197 Pfam LIM domain 10 64 IPR001781 -
Dod08g1998 197 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 183 - -
Dod08g1998 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1998 Dod-Chr8 47135206 47137727 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Dod08g1998 LIM 1.5e-12 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1998 08 47135206 47137727 Dod08g1998 08 47135206 47137727 ECH
Dod08g1998 08 47135206 47137727 Dod09g2038 09 41869980 41872019 PCT