Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0827 ATGGCCACTGAAGAGGTCAACAAGCCTCCATCACTTCCTCCATACCCTGAGATGATTATGAAGGCACTTGAAGCACTGAATGAGGCCGGTGGATCCAACAAATCAGCCATATCAAAGTACATAGAATCAACCTATGGTGAGTTGCCAGAAGGCCACACAACACTCCTGACTCACCACCTCAACAGGATGAAGGACAGTGGTGAGCTTGTGTTCTTGAAGAACAACTACATGAAGCCTGACCCTAATGCCCCACCGAGGAGGGGCCGTGGGAGGCCACCAAAACCAAAGGCGCCTCTCCCACCAGGCACTGTTTTGTCCCCACCAAGGCCAAGGGGTCGCCCTCCAAAGGACCCCAATGCCCCACCAAAGCCACCTAAGGCTAAGTCCACACCTGGAAGTGGCAGGCCAAGAGGCAGGCCTAAGAAGATTGCCCGGTCCTCGCCTGTTGCGGCGCCGCCGAGTGCCGCCGCGGCCACCGGTGGAAGGCCTAGAGGTAGGCCTCCCAAGGTGAAGCCTCAATTGACAGAAGTGAGTGTTGAGTCATAG 546 0.5604 MATEEVNKPPSLPPYPEMIMKALEALNEAGGSNKSAISKYIESTYGELPEGHTTLLTHHLNRMKDSGELVFLKNNYMKPDPNAPPRRGRGRPPKPKAPLPPGTVLSPPRPRGRPPKDPNAPPKPPKAKSTPGSGRPRGRPKKIARSSPVAAPPSAAAATGGRPRGRPPKVKPQLTEVSVES* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0827 181 Pfam linker histone H1 and H5 family 13 73 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod08g0827 181 PRINTS AT-hook-like domain signature 86 96 IPR017956 GO:0003677
Dod08g0827 181 PRINTS AT-hook-like domain signature 106 117 IPR017956 GO:0003677
Dod08g0827 181 PRINTS AT-hook-like domain signature 132 142 IPR017956 GO:0003677
Dod08g0827 181 SMART h15plus2 9 75 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod08g0827 181 PANTHER HISTONE H1 1 177 - -
Dod08g0827 181 MobiDBLite consensus disorder prediction 71 181 - -
Dod08g0827 181 MobiDBLite consensus disorder prediction 94 129 - -
Dod08g0827 181 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod08g0827 181 PANTHER HMG-Y-RELATED PROTEIN A 1 177 IPR031059 GO:0003677|GO:0005634
Dod08g0827 181 SMART AT_hook_2 134 146 IPR017956 GO:0003677
Dod08g0827 181 SMART AT_hook_2 161 173 IPR017956 GO:0003677
Dod08g0827 181 SMART AT_hook_2 108 120 IPR017956 GO:0003677
Dod08g0827 181 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Dod08g0827 181 SUPERFAMILY "Winged helix" DNA-binding domain 8 87 IPR036390 -
Dod08g0827 181 PRINTS High mobility group protein (HMGY) signature 84 96 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Dod08g0827 181 PRINTS High mobility group protein (HMGY) signature 110 121 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Dod08g0827 181 PRINTS High mobility group protein (HMGY) signature 99 110 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Dod08g0827 181 PRINTS High mobility group protein (HMGY) signature 123 142 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Dod08g0827 181 Gene3D - 7 85 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0827 Dod-Chr8 9827109 9828984 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0827 08 9827109 9828984 Dod04g0223 04 2779531 2781018 PCT