Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1544 ATGGACACAGCTCAGTGGCCACAGGAGATTGTGGTGAAACCAATAGAAGAAATAGTAGTGACAAATACATGTCCAAAACCTGCATCAGCAGTGGAGAGTAGGAAGCCAAGGCCACAGAAAGAACAAGCCCTAGACTGTCCAAGGTGCCATTCAACCAACACAAAGTTCTGCTACTACAACAACTACAGCCTCACACAGCCAAGGTACTTCTGCAAGACCTGTAGAAGGTACTGGACTGAAGGTGGGTCCCTCAGGAACATCCCTGTTGGTGGTGGATCAAGGAAGAACAAGAGATCTTCTGCTTCTTGTTCCTCCTCCTCATCAATACCATCACCTTCAGGTCCTTCACCAAAGAGCATCAAGCTTCCTGATCTGGTAGTCACACCCCACCAAAGTTTGTCTCAGAATTGCACTCAGGATAATAACCCTAAGGTTCATGAAGGCCAGGATCTGAACCTGGCCTTCCCAGCAGCCACCCCAAGAGATTATAGAAACATCTCTGAATTGGTTCAACAAAAGAACAACAATAGTAACAACAACAACAACAACACTGTGTCTGCTTCAGCTTCATCTTCTTCAACTACTACTAGCACTACTACAGCTTCCGCCTCTCATCACCTCTCAGCACTGGAGCTTCTTACTGGGATCACTTCTTCAAGTTCAAGGGGTTTGAACTCCTTCATGCCTGTGCCATCATCAGTTCCACATGATCCAAACATGGTTTACACTTTCCCTATTCAGGATTTCAAGCCAAGCTTGAATTTCTCTTTGGATGGGTTTGGAAGTGGGTTTGGTAGCCTGCAGGGTGTTCAAGAGACAAGTGGTGGTGGCGGTGGGAGGCTCTTGTTCCCATTTGAAGATTTGAAACAGGTTTCTAGCACCACCACCAATAGCAACAAGGAGCAACAAGGGGATTCAACTGGGTATTGGACTGTGGCTGCAAGATTCTTCTATGGGCATTAA 963 0.4642 MDTAQWPQEIVVKPIEEIVVTNTCPKPASAVESRKPRPQKEQALDCPRCHSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSASCSSSSSIPSPSGPSPKSIKLPDLVVTPHQSLSQNCTQDNNPKVHEGQDLNLAFPAATPRDYRNISELVQQKNNNSNNNNNNTVSASASSSSTTTSTTTASASHHLSALELLTGITSSSSRGLNSFMPVPSSVPHDPNMVYTFPIQDFKPSLNFSLDGFGSGFGSLQGVQETSGGGGGRLLFPFEDLKQVSSTTTNSNKEQQGDSTGYWTVAARFFYGH* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1544 320 ProSitePatterns Zinc finger Dof-type signature. 46 82 IPR003851 GO:0003677|GO:0006355
Dod06g1544 320 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 311 IPR045174 GO:0003700|GO:0006355
Dod06g1544 320 MobiDBLite consensus disorder prediction 85 122 - -
Dod06g1544 320 MobiDBLite consensus disorder prediction 93 115 - -
Dod06g1544 320 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 311 - -
Dod06g1544 320 MobiDBLite consensus disorder prediction 173 200 - -
Dod06g1544 320 ProSiteProfiles Zinc finger Dof-type profile. 44 98 IPR003851 GO:0003677|GO:0006355
Dod06g1544 320 Pfam Dof domain, zinc finger 42 98 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1544 Dod-Chr6 20779359 20782153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1544 1 311 C2C2-Dof Transcription Factor Family AT4G24060 45.584 9.88e-60 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dod06g1544 zf-Dof 3.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1544 - - pvu:PHAVU_001G080800g 333.569