Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0187 ATGCCCGAGCCTCGGAAACAACCGGCCAATAGATTCAAGCAAAGGACTCACTCCTTTCCAGAGTCCAAGATGTCAAGAAAACTTCGTATCATCTACACCGATCCTGATGCTACTGACTCATCGGACGATGAATCAGACATGATTCTTAGCCAAAAGAAAATCAAAAGAAACATATGCGAGATCCCGCTCCCCCTAGTTTCTGCACTCTCCACCCCCACCACCTCCTGTGAGTTGAATGCCATTAACAACTCGTTGAAGAGTCAAAACCCTACAAAGAGGAGGGTTTCAACAAAAACCCCATCAACCAAGAGGCAAACAGCTGGCAAATACAGAGGTGTTAGGATGAGGAAGTGGGGGAAATGGGCTGCTGAGATTCGTGACCCTTTCAAGAGTGCCAGAGTCTGGTTAGGCACCTACGCTACTGCTGAAGAGGCCTCTCAAGTTTACGAGGCCAAAAGACTCGAGTTTGAAGCGATGGCAAGGTCTCAGTCTTTCAAGAGCAACGATGGTTCGTCTCCTGTTGCACCTATGTCTGCATCTTCTGATAATAAGAGTAACTGCTGTAACTCTTCTCCCGGTGCAGTTTCTGTATCTGACAAGTCTTCTACCATAGAGGATTCTTCGGAGAGCGTCTTGTCTCACACATCACCATCATCCGTGCTTGAGTTGGATACCTTGGCTTCTAATATGAACGAGAAGACTATTGTATCAAGCAGTGCTGAAGCTGTTGTTGAGACCAATGATTTTAAGGCTGAACTTGCTGGGCTGGAGATACCACAAGATCTGAGTGTGCTGAGCTTACCCTTGCCTCCACTACCCGCTGCTGATCCATCTGGGGTGCAGACTAACCTTGATCTTGATTTTGGATGGTTAGCTTTTGATAATTGTGTGCAGGGATTTGATGATCTTTGTGGCTTGGAGGATATCCCAATCTGTGGCTTTGATGACAATGAGCCTAGTGAGCTTCCTGATTTCGACTTTGGTGATTTTGGTGCTGATGAGTTTGCTGGTTGGACCGAGGGACCCCTCAATATACCGTGCGCATAA 1047 0.4699 MPEPRKQPANRFKQRTHSFPESKMSRKLRIIYTDPDATDSSDDESDMILSQKKIKRNICEIPLPLVSALSTPTTSCELNAINNSLKSQNPTKRRVSTKTPSTKRQTAGKYRGVRMRKWGKWAAEIRDPFKSARVWLGTYATAEEASQVYEAKRLEFEAMARSQSFKSNDGSSPVAPMSASSDNKSNCCNSSPGAVSVSDKSSTIEDSSESVLSHTSPSSVLELDTLASNMNEKTIVSSSAEAVVETNDFKAELAGLEIPQDLSVLSLPLPPLPAADPSGVQTNLDLDFGWLAFDNCVQGFDDLCGLEDIPICGFDDNEPSELPDFDFGDFGADEFAGWTEGPLNIPCA* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0187 348 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Dod06g0187 348 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Dod06g0187 348 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700|GO:0006355
Dod06g0187 348 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 348 - -
Dod06g0187 348 SMART rav1_2 109 172 IPR001471 GO:0003700|GO:0006355
Dod06g0187 348 MobiDBLite consensus disorder prediction 1 28 - -
Dod06g0187 348 MobiDBLite consensus disorder prediction 86 106 - -
Dod06g0187 348 MobiDBLite consensus disorder prediction 163 216 - -
Dod06g0187 348 Pfam AP2 domain 109 158 IPR001471 GO:0003700|GO:0006355
Dod06g0187 348 PIRSF PTI6 291 338 IPR017392 GO:0003700
Dod06g0187 348 PIRSF PTI6 6 262 IPR017392 GO:0003700
Dod06g0187 348 MobiDBLite consensus disorder prediction 86 110 - -
Dod06g0187 348 CDD AP2 109 156 IPR001471 GO:0003700|GO:0006355
Dod06g0187 348 SUPERFAMILY DNA-binding domain 109 157 IPR016177 GO:0003677
Dod06g0187 348 Gene3D AP2/ERF domain 108 166 IPR036955 GO:0003700|GO:0006355
Dod06g0187 348 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 13 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0187 Dod-Chr6 2822204 2823250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0187 21 347 AP2-EREBP Transcription Factor Family AT1G68550 34.615 2.29e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Dod06g0187 AP2 2.6e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0187 06 2822204 2823250 Dod06g0187 06 2822204 2823250 ECH