Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod06g0167 | ATGTCCACAATTACAAAGAGAGAGTTGGGCTCTAATGAAGAAGAAAGTGAACTGAGAAGGGGCCCTTGGACTCTTGAAGAAGACAGCCTACTCATACACTATATTGCTCGTCATGGAGAAGGTCGTTGGAATATGTTAGCCAAAAGTGCAGGATTGAAGAGGACTGGAAAAAGCTGCAGGCTCAGATGGCTGAATTACTTGAAACCTGACATCAAGAGAGGGAACCTCACCCCACAAGAACAACTCTTGATCCTTGAACTCCATTCCAAGTGGGGTAACAGGTGGTCAAAAATTGCTCAGCATCTTCCAGGAAGAACTGACAATGAGATTAAGAACTACTGGAGAACAAGGGTGCAGAAACAGGCACGCCAACTTAACATTGAATCTGGAAGCAAGAGGTTCATTGATGCGGTTAAGTGTTTTTGGATGCCAAGATTGCTTCAGAAGATGGAACAGAACTCTTCCCCCAGCACATACTCTTCCATGACAAACATGAACTTTGGGAATCCCTCTGCAGAAGCTTCAATCAGTTCAGTGTCAAACTGCTCCAACATTCCATCTGTATCATCTACACCATCTCCTCTACAAGGGGAATTCATAGATGCTGCAAATCATTTTAGCAATATGTCCAGCCCCAGCAATCCTTCCTCGGATTCACTCCAATTTTCAGAGCTACTTGAGATGTCAGAACACCTAACAAGTCCTCCCAATGTGTTTGAGAACAATGTTTACACTAATCCAATTCAGGACAGCTGGACTGTTGATACCAGTAACTATGCCATGATGGAAGGCCTAAACATGGATCCCATGTCAGTAATGGGAACTTATGATATTCCACAGTTTGATTTTCAAGCTGCTGGGAGTGACTGGATGTATGACAACATGGGAGGAGACAGTTTATGGAACATGGATGCTATATAA | 921 | 0.4343 | MSTITKRELGSNEEESELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFIDAVKCFWMPRLLQKMEQNSSPSTYSSMTNMNFGNPSAEASISSVSNCSNIPSVSSTPSPLQGEFIDAANHFSNMSSPSNPSSDSLQFSELLEMSEHLTSPPNVFENNVYTNPIQDSWTVDTSNYAMMEGLNMDPMSVMGTYDIPQFDFQAAGSDWMYDNMGGDSLWNMDAI* | 307 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod06g0167 | 306 | SMART | sant | 19 | 69 | IPR001005 | - | |
| Dod06g0167 | 306 | SMART | sant | 72 | 120 | IPR001005 | - | |
| Dod06g0167 | 306 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Dod06g0167 | 306 | Pfam | Myb-like DNA-binding domain | 73 | 116 | IPR001005 | - | |
| Dod06g0167 | 306 | Pfam | Myb-like DNA-binding domain | 20 | 67 | IPR001005 | - | |
| Dod06g0167 | 306 | ProSitePatterns | Phosphoglycerate mutase family phosphohistidine signature. | 35 | 44 | IPR001345 | GO:0003824 | |
| Dod06g0167 | 306 | SUPERFAMILY | Homeodomain-like | 18 | 114 | IPR009057 | - | |
| Dod06g0167 | 306 | PANTHER | TRANSCRIPTION FACTOR MYB21-LIKE | 4 | 304 | - | - | |
| Dod06g0167 | 306 | Gene3D | - | 76 | 118 | - | - | |
| Dod06g0167 | 306 | CDD | SANT | 77 | 116 | IPR001005 | - | |
| Dod06g0167 | 306 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 15 | 67 | IPR017930 | - | |
| Dod06g0167 | 306 | PANTHER | MYB TRANSCRIPTION FACTOR-RELATED-RELATED | 4 | 304 | IPR044676 | GO:0003700|GO:0006355|GO:0043565 | |
| Dod06g0167 | 306 | CDD | SANT | 22 | 67 | IPR001005 | - | |
| Dod06g0167 | 306 | ProSiteProfiles | Myb-like domain profile. | 15 | 67 | IPR001005 | - | |
| Dod06g0167 | 306 | Gene3D | - | 17 | 73 | - | - | |
| Dod06g0167 | 306 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 68 | 122 | IPR017930 | - | |
| Dod06g0167 | 306 | ProSiteProfiles | Myb-like domain profile. | 68 | 118 | IPR001005 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dod06g0167 | Dod-Chr6 | 2509002 | 2510846 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dod06g0167 | 15 | 306 | MYB Transcription Factor Family | AT1G68320 | 52.740 | 1.05e-90 | 270 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB | Dod06g0167 | Myb_DNA-binding | 3.2e-15 | CL0123 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Dod06g0167 | 06 | 2509002 | 2510846 | Dod06g0167 | 06 | 2509002 | 2510846 | ECH |