Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0125 ATGCCATCCACTGCTCTTCTCTCTTCTCCGCAACCGCAACCGCAACCGCAACAGCAACGTTCGTCCATTTCCAAAACCCTAAAACCTTCGATTCACCTGGTCTCAATCGCCATGAAGGACCGCCCCACGCTGTCCTCCTATGGCGCCATTTACGTTCCGCCGCACCACCGCCTCCGCTCCATCGTCATCACTTCCGCCAATCACACCTCCTCCGCTCCCGCCGCCGCCAAGCTCCGCGACCACCACGATGCGGTTCTAAACCCTAGACCCTCCGCTGCAGCTTCTACTACACTGCCTCACTCGCAAACGCTGTTGCCGGAGCAAATTCCAAACAAGGCGAATTCGCGCTTCGTTTCTGCTTACGATGACAGTGTTTCCGAGGAAGGCTCCGATCGTGAATTCGAGGCTCCGCCGCTACCGAGTGCTTCCCCCAGTGATAACACTGATGAGTGGAAGAAGAAATTAACATTGCTATTAAATGACAAGAATAAGCAAGAATTGGTCTCAAGGGAGAAAAAGGATAGGCGTGATTTTGATCAAATAGCACTTTTGGCTAGCAGAATGGGGATGTATAGCCATATGTATGCAAAGGTGGTTGTCTTTAGCAAGGTCCCACTTCCAAACTATAGATATGATTTGGACCACCGGCGGCCACAGAGGGAGGTGAGCGTGCCTATTAGCTTGTTAAGGCGAGTTGAACGGTATTTTGAGGAACACCTTACTCAAAAGTCCAAGGTGAAGAAAAGCTTTTCAGATTTGTCATTTGCAAGATCAAGCAGTAACAGTAGCATCGGTACAGATGAAGGGCTTTTTGAGCACCCTGAGCCACTAGCATCCAGTAAGGCTGTTGTGGAGAAAATTCTCCGGCGGAAGAGCTTGCAAATGCGTGATCAGCAGCAATCTTGGCAGGAATCTCCTGAAGGAAGAAGAATGCTAGAATTTCGTAGCAGTCTCCCTGCTTATAAAGAGAGAGAAACAATATTGTCAGCTTTATCAAGAAATCAGGTAGTCATCATTTCAGGCGAAACAGGTTGTGGCAAGACCACTCAAATTCCACAATTTATTTTAGAATCCGAGATAGAATCTGTTTGTGGAGCTGCTTGTAATATTATATGCACACAGCCAAGACGCATTTCAGCTATGTCTGTTTCTGAAAGGGTTGCCTTTGAGAGGGGGGAGAAATTGGGTGAATCTGTTGGATATAAAGTTCGACTGGAGGGTATGAAAGGGAAAGATACCCATCTTCTCTTTTGCACCACAGGCATCTTATTAAGAAGGTTACTAGCTGATAGAAACTTAACAGGTGTAACTCATGTTGTTGTTGATGAAATTCATGAGCGTGGGATGAATGAAGATTTTCTGCTTATTGTCCTTAAGGATATCCTTCCCCACCGACCAGAACTGAAACTGATTTTGATGAGCGCTACCCTAGATGCAGAGCTTTTTTCTTCTTATTTTAATGGGGCTCCAGTTATCAATATTCCGGGCTTCACATACCCCGTTAGAACTCATTTTTTGGAGAACATTCTCGAAATGACGGGCTACAGATTGACTCCTTATAATCAAATTGATGATTATGGTCAAGAAAGGATGTGGAAAATGAACAAACAGGCCCCAAGAAAGAGAAAAAGCCAAATCGCTTCTGCTGTAGAGGATGCTGTTAGATCTGCTGATTTCAAAGATTACAGCCCACAGACGCAGGAGTCTCTGTCATGTTGGAATCCTGACTGTATTGGTTTTAGTCTCATAGAATATATCTTATGCAATATATGTGAGAATGAATGGCCTGGTGCTGTTTTGGTTTTTATGACTGGATGGGATGATATAAGCTCTCTCAAAGAGAAGTTCCTTACACATCCTGTCTTGGGAGATCCAAACCGAGTTTTGTTGCTCACATGTCATGGCTCAATGGCTAGTTCAGAACAGAGGTTAATATTTGAAGAGCCCAAAGATGGAGTAAGAAAAATAGTGCTAGCAACAAATATTGCTGAAACGAGTATCACTATTAATGATGTTGTTTTCGTTCTTGACTGTGGAAAGGCAAAAGAAACATCATATGATGCACTGAATAACACACCCTGTTTGCTTCCTACATGGATCTCCAAGGTTTCTGCTCAACAAAGAAGAGGAAGAGCTGGTCGTGTTCAACCAGGGGAGTGTTACCATCTCTATCCTAGATGTGTATATGATGCTTTAGCAGAGTATCAATTACCAGAAATTTTGAGGACACCATTGCAATCTCTGTGTTTGCAAATCAAAAGTCTTAGACTTGGAAGTATATCTGAGTTTTTGTCTAGAGCTTTGCAGTCTCCTGAGATCCTTGCGGTGCAAAATGCTGTTGAATATTTGAAAATAATTGGGGCTTTGGATGAGAATGAGAATCTGACTATTCTAGGGCGCTACCTGACAATGCTTCCTATGGAACCCAAACTTGGCAAGATGCTTATATTAGGTGCTATCTTCAATTGCCTGGATCCAATATTAACTGTTGCTGCTGGCCTTAGTGTGAGAGATCCTTTCCTAACACCGCTGGATAAGAAAGATCTTGCAGAGGCAGCAAAATCTCAATTTTCGGGGGCGTACAGTGACCACCTTGCACTTATAAGGGCTTATGAGGGTTGGAAAGATGCTGAAAAAGACCTGGGTGGATATGAATATTGCTGGAAAAATTTTCTTTCAGCACAATCAATGAAAGCTATTGATGCTCTGAGGAGAGAGTTCAGATGCTTGATCAAGGATATTGGATTAGTTGATAGCAACCCAGCCAGCTGCAATGCATGGAGCAGTGATGTGAATCTTATCCGGGCAGTTATTTGCTATGGTCTATATCCTGGAATTTGCTCTGTTGTGCATAATGAGAAGTCATTCTCTCTGAAAACAATGGAGGATGGTCAAGTGCTCCTATATTCGGTTAGTCCATTCTGGTTATTTTAA 2934 0.4366 MPSTALLSSPQPQPQPQQQRSSISKTLKPSIHLVSIAMKDRPTLSSYGAIYVPPHHRLRSIVITSANHTSSAPAAAKLRDHHDAVLNPRPSAAASTTLPHSQTLLPEQIPNKANSRFVSAYDDSVSEEGSDREFEAPPLPSASPSDNTDEWKKKLTLLLNDKNKQELVSREKKDRRDFDQIALLASRMGMYSHMYAKVVVFSKVPLPNYRYDLDHRRPQREVSVPISLLRRVERYFEEHLTQKSKVKKSFSDLSFARSSSNSSIGTDEGLFEHPEPLASSKAVVEKILRRKSLQMRDQQQSWQESPEGRRMLEFRSSLPAYKERETILSALSRNQVVIISGETGCGKTTQIPQFILESEIESVCGAACNIICTQPRRISAMSVSERVAFERGEKLGESVGYKVRLEGMKGKDTHLLFCTTGILLRRLLADRNLTGVTHVVVDEIHERGMNEDFLLIVLKDILPHRPELKLILMSATLDAELFSSYFNGAPVINIPGFTYPVRTHFLENILEMTGYRLTPYNQIDDYGQERMWKMNKQAPRKRKSQIASAVEDAVRSADFKDYSPQTQESLSCWNPDCIGFSLIEYILCNICENEWPGAVLVFMTGWDDISSLKEKFLTHPVLGDPNRVLLLTCHGSMASSEQRLIFEEPKDGVRKIVLATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPTWISKVSAQQRRGRAGRVQPGECYHLYPRCVYDALAEYQLPEILRTPLQSLCLQIKSLRLGSISEFLSRALQSPEILAVQNAVEYLKIIGALDENENLTILGRYLTMLPMEPKLGKMLILGAIFNCLDPILTVAAGLSVRDPFLTPLDKKDLAEAAKSQFSGAYSDHLALIRAYEGWKDAEKDLGGYEYCWKNFLSAQSMKAIDALRREFRCLIKDIGLVDSNPASCNAWSSDVNLIRAVICYGLYPGICSVVHNEKSFSLKTMEDGQVLLYSVSPFWLF* 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0125 977 Gene3D - 581 735 IPR027417 -
Dod06g0125 977 Gene3D - 758 862 - -
Dod06g0125 977 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 105 972 - -
Dod06g0125 977 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 321 881 IPR027417 -
Dod06g0125 977 Pfam DEAD/DEAH box helicase 326 478 IPR011545 GO:0003676|GO:0005524
Dod06g0125 977 SMART ha2_5 778 868 IPR007502 GO:0004386
Dod06g0125 977 SMART helicmild6 607 716 IPR001650 -
Dod06g0125 977 Gene3D - 276 496 IPR027417 -
Dod06g0125 977 CDD DEXHc_RHA-like 334 494 - -
Dod06g0125 977 MobiDBLite consensus disorder prediction 127 148 - -
Dod06g0125 977 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 582 756 IPR001650 -
Dod06g0125 977 SMART ultradead3 316 509 IPR014001 -
Dod06g0125 977 MobiDBLite consensus disorder prediction 1 26 - -
Dod06g0125 977 MobiDBLite consensus disorder prediction 90 109 - -
Dod06g0125 977 CDD SF2_C_RHA 562 724 - -
Dod06g0125 977 PANTHER ATP-DEPENDENT RNA HELICASE 105 972 - -
Dod06g0125 977 Pfam Helicase conserved C-terminal domain 584 715 IPR001650 -
Dod06g0125 977 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 328 495 IPR014001 -
Dod06g0125 977 MobiDBLite consensus disorder prediction 87 109 - -
Dod06g0125 977 Pfam Helicase associated domain (HA2) 779 852 IPR007502 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0125 Dod-Chr6 1673693 1689351 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0125 06 1673693 1689351 Dod06g0125 06 1673693 1689351 ECH