Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0115 ATGGCATCACGCAGGATCGTATCCTCTTTGATTCGATCTTCTCTCCGCCGATCTCAATCCAAGCCTTCCATTTCCGCTTCAACATCATCGAGGCTCTCTTCCCAATCCACCGGCCGCGCTTCTCCCCATGGCTACCTCCTCGGCCGGGTAGCCGAGTACGCTACATCTGCCGCTGCGTCGGCCGCTCCTCCTTCTCCGCCTCCTCCAGCCAAGAAGGAGTCCGGCGGTGGCGGAAAGGTCACCGATGAGTTCACAGGCAAGGGTGCCATCGGACACGTCTGCCAGGTCATTGGTGCCGTCGTTGACGTCAGATTCGACGAGGGATTGCCACCGATCCTTACGGCGCTTGAGGTTCTGGATCACTCGTCGAGACTGGTGCTGGAGGTGGCTCAGCATTTGGGCGAGGGCGTTGTGAGAACCATTGCTATGGATGGCACTGAAGGTGTTGTCAGAGGTTGGCGCGTGCTCAACACCGGCTCACCTATCACCGTTCCCGTTGGTAGGGCGACCCTTGGCCGGATCATTAATGTCATTGGAGAGCCTATCGATGAGAAGGGTGACATAAAAACCGAGCATTATTTGCCCATTCATAGAGAAGCTCCTGCTTTTGTTGAGCAAGCAACTGAGCAGCAGATTCTTGTTACTGGAATCAAGGTTGTTGACCTGCTTGCACCGTACCAAAGAGGAGGAAAGATTGGGTTGTTTGGTGGTGCTGGTGTAGGAAAAACTGTGCTTATTATGGAACTTATTAACAACGTTGCAAAGGCTCATGGTGGTTTCTCTGTGTTTGCTGGTGTCGGAGAAAGAACCCGAGAGGGTAATGACTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGCTAGGTGACAAGCAGAGTGAAAGCAAATGTGCTCTAGTGTATGGTCAAATGAACGAGCCCCCTGGTGCCCGTGCCCGTGTTGGTCTTACTGGGCTTACTGTTGCTGAACACTTCCGTGATGCTGAAGGGCAGGATGTGCTTCTCTTTGTTGACAACATTTTCCGCTTTACCCAAGCTAACTCAGAGGTGTCTGCTTTGCTTGGACGTATCCCATCTGCTGTCGGTTACCAACCAACCTTGGCCACTGATCTTGGAGGTCTTCAAGAGCGTATTACAACAACCAAGAAGGGTTCAATTACCTCTGTCCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCTACCACCTTTGCTCACTTGGATGCTACAACAGTGTTATCACGACAGATCTCTGAGCTGGGTATCTATCCTGCTGTGGACCCCTTGGATTCCACATCTCGTATGCTTTCCCCACTTATTTTGGGTGAGGAGCACTACGAAACTGCTCGTGGTGTCCAGAAGGTTCTTCAAAACTACAAGAATCTTCAAGATATCATTGCTATTTTGGGAATGGATGAGCTCAGTGAAGACGATAAATTGACCGTTGCCCGTGCCCGTAAAATTCAACGATTCTTGAGCCAGCCTTTCCATGTTGCAGAAGTATTCACTGGTGCCCCAGGCAAATATGTTGAGTTGAAGGAGAGCATTAACAGCTTCCAGGGTGTGTTGGATGGCAAATACGATGACTTGTCAGAGCAGTCATTTTACATGGTTGGCGGTATTGATGAGGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCAGCATCTTAA 1686 0.5018 MASRRIVSSLIRSSLRRSQSKPSISASTSSRLSSQSTGRASPHGYLLGRVAEYATSAAASAAPPSPPPPAKKESGGGGKVTDEFTGKGAIGHVCQVIGAVVDVRFDEGLPPILTALEVLDHSSRLVLEVAQHLGEGVVRTIAMDGTEGVVRGWRVLNTGSPITVPVGRATLGRIINVIGEPIDEKGDIKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPLILGEEHYETARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESINSFQGVLDGKYDDLSEQSFYMVGGIDEVIAKAEKIAKESAS* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0115 561 Pfam ATP synthase alpha/beta family, beta-barrel domain 93 159 IPR004100 GO:0046034|GO:1902600
Dod06g0115 561 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 440 556 - -
Dod06g0115 561 PANTHER ATP SYNTHASE 3 560 - -
Dod06g0115 561 MobiDBLite consensus disorder prediction 1 43 - -
Dod06g0115 561 PIRSF ATPase_subunit_beta 6 561 - -
Dod06g0115 561 PANTHER ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 3 560 - -
Dod06g0115 561 Pfam ATP synthase F1 beta subunit 1 49 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Dod06g0115 561 Gene3D ATP synthase, F1 beta subunit 1 53 IPR042079 -
Dod06g0115 561 Gene3D - 79 161 - -
Dod06g0115 561 Gene3D - 162 439 IPR027417 -
Dod06g0115 561 Hamap ATP synthase subunit beta [atpB]. 88 555 IPR005722 GO:0015986|GO:0045261|GO:0046933
Dod06g0115 561 MobiDBLite consensus disorder prediction 1 41 - -
Dod06g0115 561 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 216 437 IPR000194 GO:0005524
Dod06g0115 561 SMART AAA_5 228 500 IPR003593 -
Dod06g0115 561 CDD F1-ATPase_beta 161 442 - -
Dod06g0115 561 CDD ATP-synt_F1_beta_C 444 551 - -
Dod06g0115 561 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 87 161 IPR036121 GO:0046034|GO:1902600
Dod06g0115 561 TIGRFAM atpD: ATP synthase F1, beta subunit 90 555 IPR005722 GO:0015986|GO:0045261|GO:0046933
Dod06g0115 561 ProSitePatterns ATP synthase alpha and beta subunits signature. 428 437 IPR020003 GO:0005524
Dod06g0115 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 443 IPR027417 -
Dod06g0115 561 MobiDBLite consensus disorder prediction 57 83 - -
Dod06g0115 561 Gene3D - 440 561 IPR024034 -
Dod06g0115 561 CDD ATP-synt_F1_beta_N 89 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0115 Dod-Chr6 1490453 1493847 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0115 126 498 Primary Pumps ATPases(2) AT1G20260 28.928 5.44e-30 121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0115 06 1490453 1493847 Dod06g0115 06 1490453 1493847 ECH