Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0081 ATGGCTTCTTCCCAAACATCACGTGTTCCCCATGTCCTCCTTCTCTCCCTCGCCCTTCTTCTGGCTGTCGGGTTCGCCCTCGACATGTCCATCATCGACTACGATGCCAAGCTCGAGGCCGTGTCGGAGACCCACCTCATGAACCTCTACGAGGCCTGGCTTGTGAAGCATGGCAAGGCCTATAATGCTCTGGGGGAGAAAGAGCGCAGGTTTGAGATCTTCAAGGACAACCTGCGGTTCATTCAGGAGCACAACACCGCTGACGGGAACCGACCTTACAAGTTGGGGTTGAACAAGTTCGCAGATCTCACCAATGACGAGTACAAGGCCATGTATTTGGGCACCAAAAGCCGCAGGTCCCACGAAGGGATGCTTTCTGGGCCCAACAAAAAGAGCAGTGATCGCTATGTTTATCGTGAGGGTGAGGAGTTGCCTACTTTGGTGGATTGGAGGGAGAAGGGTGCTGTTGTTCCTGTTAAAGATCAAGGCCAATGTGGGAGTTGCTGGGCATTCTCCACAATCGGTGCAGTGGAAGGGATCAATCAAATTGTAACTGGTGACCTGATTTCTCTGTCAGAGCAGGAGTTGGTAGATTGTGATAAGAGCTATAACATGGGATGCAATGGAGGTCTCATGGACTATGCTTTCGACTTTATAGTGAAAAATGGAGGCATTGATACCGAGGAGGATTACCCATACCATGCTCGTGACAATGTTTGTGATCTCAACAGAAAAAATCTTCATGTAGTCACCATTGATGGACATGAAGATGTCCCAGCAAATGATGAGAAGGCCTTGATGAAGGCTGTTGCACACCAACCAGTTAGTGTTGCCATTGAAGCTGGGGGCAGGGCCTTTCAACTTTATCAATCGGGTGTTTTTACTGGCATCTGTGGAACAGAACTTGACCACGGTGTTGTGGCAGTAGGATATGGAACAGAAAATGGTACAGATTACTGGCTGGTGAGAAACTCCTGGGGTCCATCATGGGGTGAGAATGGTTACATTAAGTTGGAGAGGAATTTGGCAAGCTCTCAGACAGGAAAGTGTGGTATTGCAATGGAGGCATCATACCCCATCAAAAACGGTGCCAACCCACCACACCCTGGTCTCTCACCTCCATCTCCTGCAAGCCCGTCAATTGTGTGTGATGAATACTACTCATGCCCCCCTGGAACAACATGCTGCTGCATGTTTCAGTATGGAGGCTTCTGCTTTGGATGGGGATGCTGCCCCATTGAATCTGCAACCTGCTGTGATGATGGCTCCAGCTGCTGCCCCCCTGAGTACCCAGTCTGTGATACTGGGGCTGGAGCTTGCAGATTGAACCAAGGCAACCCATTTGGAGTGAATGCTTTGGTGCGAACACCCGCACAAAGGAAAGCTGCCATGAAAAGTAACTTTGCATAA 1410 0.4986 MASSQTSRVPHVLLLSLALLLAVGFALDMSIIDYDAKLEAVSETHLMNLYEAWLVKHGKAYNALGEKERRFEIFKDNLRFIQEHNTADGNRPYKLGLNKFADLTNDEYKAMYLGTKSRRSHEGMLSGPNKKSSDRYVYREGEELPTLVDWREKGAVVPVKDQGQCGSCWAFSTIGAVEGINQIVTGDLISLSEQELVDCDKSYNMGCNGGLMDYAFDFIVKNGGIDTEEDYPYHARDNVCDLNRKNLHVVTIDGHEDVPANDEKALMKAVAHQPVSVAIEAGGRAFQLYQSGVFTGICGTELDHGVVAVGYGTENGTDYWLVRNSWGPSWGENGYIKLERNLASSQTGKCGIAMEASYPIKNGANPPHPGLSPPSPASPSIVCDEYYSCPPGTTCCCMFQYGGFCFGWGCCPIESATCCDDGSSCCPPEYPVCDTGAGACRLNQGNPFGVNALVRTPAQRKAAMKSNFA* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0081 469 Gene3D Granulin 379 443 IPR037277 -
Dod06g0081 469 CDD Peptidase_C1A 145 359 IPR039417 -
Dod06g0081 469 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 302 312 IPR025660 -
Dod06g0081 469 SMART pept_c1 144 360 IPR000668 GO:0006508|GO:0008234
Dod06g0081 469 SUPERFAMILY Granulin repeat 382 414 - -
Dod06g0081 469 Pfam Granulin 394 440 IPR000118 -
Dod06g0081 469 Gene3D Cysteine proteinases 28 362 - -
Dod06g0081 469 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 38 389 - -
Dod06g0081 469 SMART GRAN_2 383 440 IPR000118 -
Dod06g0081 469 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 319 338 IPR025661 -
Dod06g0081 469 SUPERFAMILY Cysteine proteinases 42 360 IPR038765 -
Dod06g0081 469 Pfam Cathepsin propeptide inhibitor domain (I29) 50 108 IPR013201 -
Dod06g0081 469 Pfam Papain family cysteine protease 144 360 IPR000668 GO:0006508|GO:0008234
Dod06g0081 469 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 162 173 IPR000169 -
Dod06g0081 469 SMART Inhibitor_I29_2 50 108 IPR013201 -
Dod06g0081 469 PANTHER CYSTEINE PROTEASE 38 389 - -
Dod06g0081 469 PRINTS Papain cysteine protease (C1) family signature 319 325 IPR000668 GO:0006508|GO:0008234
Dod06g0081 469 PRINTS Papain cysteine protease (C1) family signature 162 177 IPR000668 GO:0006508|GO:0008234
Dod06g0081 469 PRINTS Papain cysteine protease (C1) family signature 304 314 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0081 Dod-Chr6 1071225 1074468 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0081 06 1071225 1074468 Dod06g0081 06 1071225 1074468 ECH
Dod06g0081 06 1071225 1074468 Dod05g1100 05 30624861 30628046 ECH
Dod08g2046 08 47814637 47820052 Dod06g0081 06 1071225 1074468 ECH