Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1823 ATGCAGGAAATACATTCCATGGGAGGGACCAGGTTCTTCGGCGGCGGCGGAGGAGCAGCAGGCGGAGGAGACAGGAGGCTGAGGCCCCACCACCACCACCACAGCCACGTTCAGAACAACAGCAGCAGCAACAACAACAACAACAACAACCACCAGCAGGCACTCAAGTGCCCTCGCTGCGACTCCCTCAACACAAAGTTCTGCTACTACAACAACTACAACCTCTCCCAGCCCCGCCACTTCTGCAAGAACTGCCGCCGCTACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGCGGCTGCCGCAAGTCCAAACGCTCCAACAAAACCAAAAACACCAGCAACGCCACCACCGCCTCCTCTTCAGAAACGACGACGTCGCCTCAGCAGCACCAGCACCAGCCACCGCCGGATCAACAAAAATCCAACTCTCACTCCAGCAGCGAGAGTTCGAGCCTCACCGCCGCGGCCGCGGCCGCGGCCGTCACGGAGCTGAACTCCGAGTCCTCAAACAACAACTTGCACGAGTCGTCGAACTTGTTGATCCCTTCTTCAAACCCTGGTTTGGAGAGTGGTACTGGTGGTGGTGGTGCTCTGGAGCAAGGTGCAGGAGGGGACTGTGGTGGAATCTTCTCTGAGATTGGGACCTTCACGAGCTTGATCGCTTCTTCTTCATCCAACAACGATGCATTGACGTTCGGGTTCGGTGGTGGTGTCACCGATGCGGCGTCGTTTCAGTGGCAGCACCAGAAGTTGCCGGAGGGTCTGAGTGGTTCTGGTGGGAGTGCTTTGCTGGATCATGGACACGGTGCGGTCACCGTTGATTTTTCGGCGATGCAGGGTAGAACCGGAAACGTAGGATTTGGACCGTTGGATTGGCAGGGAGGTGCGGATCAAGGTTTGTTTGATCTTCCTAACGCCGTTGATCAGGCTTACTGGAGTCACACTCAATGGCCTGATCAGGATAATTCGGCACTCTTTCATCTCCCCTGA 1002 0.5739 MQEIHSMGGTRFFGGGGGAAGGGDRRLRPHHHHHSHVQNNSSSNNNNNNNHQQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKTKNTSNATTASSSETTTSPQQHQHQPPPDQQKSNSHSSSESSSLTAAAAAAAVTELNSESSNNNLHESSNLLIPSSNPGLESGTGGGGALEQGAGGDCGGIFSEIGTFTSLIASSSSNNDALTFGFGGGVTDAASFQWQHQKLPEGLSGSGGSALLDHGHGAVTVDFSAMQGRTGNVGFGPLDWQGGADQGLFDLPNAVDQAYWSHTQWPDQDNSALFHLP* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1823 333 ProSiteProfiles Zinc finger Dof-type profile. 55 109 IPR003851 GO:0003677|GO:0006355
Dod05g1823 333 MobiDBLite consensus disorder prediction 99 203 - -
Dod05g1823 333 Pfam Dof domain, zinc finger 53 109 IPR003851 GO:0003677|GO:0006355
Dod05g1823 333 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 320 IPR045174 GO:0003700|GO:0006355
Dod05g1823 333 ProSitePatterns Zinc finger Dof-type signature. 57 93 IPR003851 GO:0003677|GO:0006355
Dod05g1823 333 MobiDBLite consensus disorder prediction 113 194 - -
Dod05g1823 333 PANTHER DOF ZINC FINGER PROTEIN 4 34 320 - -
Dod05g1823 333 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1823 Dod-Chr5 43729315 43733337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1823 24 333 C2C2-Dof Transcription Factor Family AT5G60850 44.127 1.99e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dod05g1823 zf-Dof 3.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1823 - - adu:107468949 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1823 05 43729315 43733337 Dod05g1823 05 43729315 43733337 ECH