Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1747 ATGCGGGAAAGTATTGGAGACCCTGCAATTAAGCTCTTTGGGCAGAAGATTCCCTTGCCCGGAGAACCCGAGATTCCTTCCACCGATTACTCTCACTCGCCGCTGGCTATGGAGCATGAAGAAGAAGAAGAAGAAGAAGAAGGAGAGCTACATGAAGAAGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGAAGATGAAGAAGAAGAAGAAGAAGAGAGAGAGGAAGACCAAGGTCACAAGGATCCAGCGGCGGAAAATGCTACTGAGAAAGAGCTAGACGGTGATCCTCCTCCTAATGCAGAAGACACTAAGAACTCAGCCATATCACCTGAGGCCATGGTGAACCCAAAGACGCCTGCCATAGAAGAAGAAGCTGCAAAATCAAAAAGTGACAAGTTGGAGAAGGAACAAGGTGATGCATCCAACTCACAAGATCAGAAACCACTGAAGAAGCCAGACAAGGTGCTTCCATGCCCCCGCTGCAATAGCATGGACACTAAATTTTGTTACTACAACAACTACAACATCAACCAGCCACGTTATTTCTGCAAAGCTTGTCAAAGATACTGGACTGCTGGTGGCACCATGAGGAATGTGCCAGTTGGGGCAGGACGACGGAAGAACAAGAACTCTACCTCCCATTATCGCAACATCACGATCTCTGAGGCTCTTCAAGCAGCTAGAATTGATGCTTCTAACGGGACTCATCTCCCTGCGTTGAAAACCAATGGTAGAGTTCTCAGCTTTGGACTAGATGCACCAATTTGTGATTCCATGGCATCTGTCCTCAACCTTGGAGACAAAAAGGTTCTTAATGGCACAAGAAATGGGTTCCATCATGGCTTTGATGATCAAAGAATAAACGTTCCATGCAAAAGTGGGCAAAACGGTGATGATTGCACAACTTCATCTTCCATTACGGTTCCAAATTCAACGGGAGAAAGTAACAAAAGCACCTTCCCAGAACCGGTACTACCGCCAAACAATGGTTTCCTTGCTCAAGTTCCATGCCTTGCTGGTGTTCCTTGGCCTTATCCATGGAATGCTCCAGTTCCCTCACCAGCTATGTGTCCTTCAGGATTTCCACTTTCATTCTATCCTCCTGCTTTTTGGAACTGCAGCATGCCAGGAAATTGGAATGTTCCATGGTTTTCCTCACATTCCTCTTCTTCAAACCCGCTGTCGCCAAGCTCCGGTCCGAATTCTCCCACTTTGGGGAAGCACTCCAGGGATGGTGACATGGTTAACCAGGACTCTTTGAGCAAAGAGGAGCCACCAAAGCAGAGAAACGGGTGTGTCTTGGTTCCCAAAACGTTGAGAATTGATGACCCAAGTGAAGCTGCAAAGAGTTCTATATGGGCAACACTAGGAATCAAGAATGAATCAGCCAGTGGGGGAGGCATGTTTAAGTCCTTCCAATCAACCAAAGAAGAAAAGAATCATGTTGAAGCCTCTCCTTTGTTGCGGGCTAACCCTGCAGCATTGTCTAGATCCCTTAATTTTCATGAGAACTCGTGA 1533 0.4651 MRESIGDPAIKLFGQKIPLPGEPEIPSTDYSHSPLAMEHEEEEEEEEGELHEEEEEEEEEEEEEDDDDEDEEEEEEEREEDQGHKDPAAENATEKELDGDPPPNAEDTKNSAISPEAMVNPKTPAIEEEAAKSKSDKLEKEQGDASNSQDQKPLKKPDKVLPCPRCNSMDTKFCYYNNYNINQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSTSHYRNITISEALQAARIDASNGTHLPALKTNGRVLSFGLDAPICDSMASVLNLGDKKVLNGTRNGFHHGFDDQRINVPCKSGQNGDDCTTSSSITVPNSTGESNKSTFPEPVLPPNNGFLAQVPCLAGVPWPYPWNAPVPSPAMCPSGFPLSFYPPAFWNCSMPGNWNVPWFSSHSSSSNPLSPSSGPNSPTLGKHSRDGDMVNQDSLSKEEPPKQRNGCVLVPKTLRIDDPSEAAKSSIWATLGIKNESASGGGMFKSFQSTKEEKNHVEASPLLRANPAALSRSLNFHENS* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1747 510 MobiDBLite consensus disorder prediction 303 325 - -
Dod05g1747 510 MobiDBLite consensus disorder prediction 469 494 - -
Dod05g1747 510 Coils Coil 36 80 - -
Dod05g1747 510 MobiDBLite consensus disorder prediction 391 437 - -
Dod05g1747 510 MobiDBLite consensus disorder prediction 391 410 - -
Dod05g1747 510 PANTHER CYCLIC DOF FACTOR 1 89 509 - -
Dod05g1747 510 PANTHER CYCLIC DOF FACTOR 2 89 509 IPR045174 GO:0003700|GO:0006355
Dod05g1747 510 ProSiteProfiles Zinc finger Dof-type profile. 161 215 IPR003851 GO:0003677|GO:0006355
Dod05g1747 510 MobiDBLite consensus disorder prediction 81 103 - -
Dod05g1747 510 MobiDBLite consensus disorder prediction 1 159 - -
Dod05g1747 510 MobiDBLite consensus disorder prediction 39 80 - -
Dod05g1747 510 ProSitePatterns Zinc finger Dof-type signature. 163 199 IPR003851 GO:0003677|GO:0006355
Dod05g1747 510 MobiDBLite consensus disorder prediction 127 159 - -
Dod05g1747 510 Pfam Dof domain, zinc finger 158 215 IPR003851 GO:0003677|GO:0006355
Dod05g1747 510 MobiDBLite consensus disorder prediction 416 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1747 Dod-Chr5 42888294 42891574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1747 1 508 C2C2-Dof Transcription Factor Family AT3G47500 45.747 3.25e-118 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dod05g1747 zf-Dof 2.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1747 - - gmx:778113 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1103 04 31459697 31464121 Dod05g1747 05 42888294 42891574 ECH
Dod05g1747 05 42888294 42891574 Dod05g1747 05 42888294 42891574 ECH
Dod04g1103 04 31459697 31464121 Dod05g1747 05 42888294 42891574 PCT