Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1111 ATGGACGTAACCCGAAGAGAAATGGATCGGATCAAGGGCCCGTGGAGCCCGGAAGAGGACGAGGCACTGCAAAGGCTGGTGGAGAGGCACGGGCCCAGGAACTGGTCGTTGATAAGCAAGTCGATCCCGGGCCGGTCCGGGAAGTCCTGCAGGCTCCGATGGTGCAACCAGCTGTCCCCCCAGGTGGAGCACCGGGCCTTCACGCCCGAAGAGGACGAGACCATAATCCGGGCCCACTCCCGATTCGGCAACAAGTGGGCCACCATAGCCCGCCTCCTAGCCGGTCGCACCGACAACGCGGTGAAAAACCACTGGAACTCAACTCTCAAGCGCAAGTGCACCTCCATGAGGATCGACGAACCCGCCGCCGGGACGGCGGGCTTCGACGGTGATTTAAGCCCGCAGCCGTTGAAGAGATCGGCGAGCGCGGGCGCGGCGATGCCGGTCTCCACCGGGCTCTACGTGAGCCCGCCCACACCCGGAAGCCCGTCAGGATCCGATGCAAGCGAGTCCAGCGTGCGCGCTGCGTCTCCACCGCACGTGTTCAGGCCCGTCCCGAGGACTGTTATTCCGCTTCTTGAAACGGCGTCATCTTCCGATTATCCGCCGACGTCTTTGTCGCTTTCGCTTCCTGGGGTGGAAACCACGGAAGCGTTGAATTGCGTTGCGGAGGCAATACCGTTGATATCGTCGGCGCCGCCGGCAACTGCCGTAACGGTTCCGGCACCGGCGCCACAGCAGCAGCAGCAGCAAGGGTTGGGGCCATTTAATTTTAGCGCGGAGCTAATGGGGGTGATGCAAGAGATGATAAGGAAGGAGGTGAGGAGTTACATGGAGCAGCGGAATGGTATGTGTTTTCAGGCTGCGGGTGGCTTTAGGAACGTGTCGGTGAGTCGAATTGGGATTAGCAGGGTCGACTCTTGA 924 0.6136 MDVTRREMDRIKGPWSPEEDEALQRLVERHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDETIIRAHSRFGNKWATIARLLAGRTDNAVKNHWNSTLKRKCTSMRIDEPAAGTAGFDGDLSPQPLKRSASAGAAMPVSTGLYVSPPTPGSPSGSDASESSVRAASPPHVFRPVPRTVIPLLETASSSDYPPTSLSLSLPGVETTEALNCVAEAIPLISSAPPATAVTVPAPAPQQQQQQGLGPFNFSAELMGVMQEMIRKEVRSYMEQRNGMCFQAAGGFRNVSVSRIGISRVDS* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1111 307 MobiDBLite consensus disorder prediction 152 180 - -
Dod05g1111 307 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Dod05g1111 307 Gene3D - 11 63 - -
Dod05g1111 307 MobiDBLite consensus disorder prediction 155 173 - -
Dod05g1111 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Dod05g1111 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Dod05g1111 307 SMART sant 11 60 IPR001005 -
Dod05g1111 307 SMART sant 63 111 IPR001005 -
Dod05g1111 307 MobiDBLite consensus disorder prediction 124 143 - -
Dod05g1111 307 PANTHER MYB TRANSCRIPTION FACTOR 1 280 - -
Dod05g1111 307 CDD SANT 14 56 IPR001005 -
Dod05g1111 307 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Dod05g1111 307 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Dod05g1111 307 Pfam Myb-like DNA-binding domain 15 73 - -
Dod05g1111 307 CDD SANT 66 109 IPR001005 -
Dod05g1111 307 Gene3D - 65 124 - -
Dod05g1111 307 PANTHER MYB PROTEIN-RELATED 1 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1111 Dod-Chr5 31165847 31168104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1111 4 306 MYB Transcription Factor Family AT4G37260 53.659 2.06e-103 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod05g1111 Myb_DNA-bind_6 2.7e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0750 02 9727186 9728208 Dod05g1111 05 31165847 31168104 ECH
Dod08g2033 08 47631129 47632268 Dod05g1111 05 31165847 31168104 ECH
Dod05g1111 05 31165847 31168104 Dod05g1111 05 31165847 31168104 ECH
Dod05g1111 05 31165847 31168104 Dod02g0750 02 9727186 9728208 PCT