Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1107 ATGGCTCCCGGAAGAGAATTAACACAGCAACACCACCACCACCACCACCACCACCACCAACAGCAGTCTCCCTCGTTCCTCGACGCCCTCCTCTGCGAAGAACAAGACACCTTTGAAGGTGAAGACTTCGAAGCAAACGGCGTCGAGTGCAACCCCAATAACGATGACCCATCATCACCCGCGAGAAAGTTTCAATCTTTGCCTTCTGTTCTGCTGGACAACGACCTGTTCTGGGAACACGACGAGCTTGCGTCCTTAATCTCCAAAGAGAGAGAGACCCATTCGCGTTCCTGCACTCTGACCCCTGATGGGCCCTTAGATGGGCCTCGCGTTGAGGCCGTCAGCTGGATTTCCAAAGTGTGTGCACACTATGGGTTCTCCGCTTTGACCACTGTTCTCTCTGTGAACTACTTTGATAGGTTCATCACAACCCTCAGGTTCCAGAAGGACCACCCCTGGATGACACAGCTCACTGCTGTTGCCTGTTTGTCCCTTGCTGCGAAGGTGGAGGAGATCCACGTGCCTCTTCTCTTAGACCTGCAAGTGGAGGAATCGAGGTTTGTGTTTGAAGCCAAGACTATACAGAGAATGGAGCTTCTGGTGTTGTCAACTCTTAAGTGGAGGATGCATCCGGTGACCCCAATTTCCTTCTTTGAGCACATTGTTAGAAGGCTTGGCCTGAAGAGCCGCTTGCATTGGGAGTTCTTATGGCGTTGTGAGCGGGTTCTTCTCAATGTCATTGCGGATCCAAGGGTTATGAGTTATCTTCCTTCTACATTGGCTGCTGCTACAATGATCTACGTTATTAGAGAGATTGAACCATTTAATGCAACCGAGTACATTAGTGAACTCCTGGGTCTACTCAAGATTAGTGAGGAACAAGTGAACCAGTGCTACAAACTCTTACTGAAGCCATTAGTTTGCTATGAAGACATTCACAATCTTCACAAGAAGCGAAAGCACCGATCTGAACCAAGTAGCCCGGGTGGTGTTATTGATGCATCTTTCAGCTGTGATAGCTTAAATGATCCATGGACCATGGCATCATCTGTCTCACATTCGGTGGAGCCACTGTTTAAGAGGAGCAGAGCTAAGGACCAGCAGATGAGATTGCCTTCTGTTAATCGTGTGTCTATTGGTGTTCTTAATAGCCCTCGCTAA 1161 0.4892 MAPGRELTQQHHHHHHHHHQQQSPSFLDALLCEEQDTFEGEDFEANGVECNPNNDDPSSPARKFQSLPSVLLDNDLFWEHDELASLISKERETHSRSCTLTPDGPLDGPRVEAVSWISKVCAHYGFSALTTVLSVNYFDRFITTLRFQKDHPWMTQLTAVACLSLAAKVEEIHVPLLLDLQVEESRFVFEAKTIQRMELLVLSTLKWRMHPVTPISFFEHIVRRLGLKSRLHWEFLWRCERVLLNVIADPRVMSYLPSTLAAATMIYVIREIEPFNATEYISELLGLLKISEEQVNQCYKLLLKPLVCYEDIHNLHKKRKHRSEPSSPGGVIDASFSCDSLNDPWTMASSVSHSVEPLFKRSRAKDQQMRLPSVNRVSIGVLNSPR* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1107 386 MobiDBLite consensus disorder prediction 1 24 - -
Dod05g1107 386 CDD CYCLIN 110 202 IPR013763 -
Dod05g1107 386 PANTHER CYCLIN-D3-2 16 370 - -
Dod05g1107 386 PANTHER CYCLINS 16 370 IPR039361 -
Dod05g1107 386 Pfam Cyclin, N-terminal domain 108 209 IPR006671 -
Dod05g1107 386 SMART cyclin_7 115 203 IPR013763 -
Dod05g1107 386 Pfam Cyclin, C-terminal domain 212 323 IPR004367 -
Dod05g1107 386 Gene3D - 211 300 - -
Dod05g1107 386 SUPERFAMILY Cyclin-like 77 210 IPR036915 -
Dod05g1107 386 SMART Cyclin_C_2 212 340 IPR004367 -
Dod05g1107 386 SUPERFAMILY Cyclin-like 213 323 IPR036915 -
Dod05g1107 386 Gene3D - 110 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1107 Dod-Chr5 30891358 30893411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1107 27 376 Core Cell Cycle Gene Families AT5G67260 52.247 4.82e-111 329
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0746 02 9690510 9692355 Dod05g1107 05 30891358 30893411 ECH
Dod08g2041 08 47772830 47775145 Dod05g1107 05 30891358 30893411 ECH
Dod08g2037 08 47710840 47713134 Dod05g1107 05 30891358 30893411 ECH
Dod05g1107 05 30891358 30893411 Dod05g1107 05 30891358 30893411 ECH
Dod05g1107 05 30891358 30893411 Dod02g0746 02 9690510 9692355 PCT