Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1100 ATGGCTGCAATGGCTATATCCACTTTGCTCTTCCTCTTCTTCACCTTGTCATCAGCCATGGACATGTCCATCATAAGCTACACCCACAACCATGACCAATCCAAATCGAGAAGCAACGAGGATGTCATGGCCCTGTATGAGGAGTGGTTGGTCAAGCACCAAAAAGTGTATAATGGGTTGGATGAGAAAGACCATAGGTTTCAAGTTTTCAAGGACAACTTGGGATTTATTGATGAGCATAACGCACAAAACAACACATACAAACTTGGGTTAAACAGGTTCGCTGATTTAACCAATGAGGAATACCAAGCCATGTATTTGGGCACGAGGAGTGATGCCAAGCGTAGGTTCATGAAAGCCAAGAGCACCGGTCACCGGTATGCTTACAGTGCCCGTGACCGCTTGCCGGTGCATGTCGATTGGAGGTTGAAAGGTGCCGTGGCTCCGATCAAAGATCAGGGAGGTTGTGGAAGTTGTTGGGCGTTCTCAACGGTGGCCGCAGTGGAAGCCATAAACAAGATAGTCACAGGGAAACTTGTCTCTTTGTCGGAACAAGAACTCGTGGACTGTGACAGAGACTACGACGAAGGATGCAATGGGGGTCTCATGGACTATGCCTACGAATTCATCATTGCAAATGGTGGCATAGACACAGAGGAAGACTATCCCTACCTGGGCTTTGATAGCAAATGTGATCCAACCAGAAAGAATGCCAAGGTTGTGAGCATTGATGGGTATGAGGATGTTCCACAAAATGATGAGAAGGCCTTAAAAAAAGCTGTGGCTCATCAGCCTGTGAGCGTTGCTATTGAAGCCTCTGGCAGGGCTTTGCAACTCTACCAGTCGGGTGTATTTACTGGCAGATGTGGGACAAACTTAGACCATGGTGTGGTTGCTGTTGGATATGGCACTGAAAATGGTATGGATTATTGGCTGGTGAGGAACTCATGGGGCAAGGGTTGGGGTGAGGATGGCTACTTCAAGTTAGAGCGCAATGTGGTGAGCACTTCCACAGGGAAGTGTGGAATCGCAATGCAGGCCTCATACCCAGTGAAGAATAGCCAAAACTCCGCAATCCGTAGTTCAGTTTATGAAAGCACTGGAGTGAATATCAGCAGTGCTTGA 1125 0.4773 MAAMAISTLLFLFFTLSSAMDMSIISYTHNHDQSKSRSNEDVMALYEEWLVKHQKVYNGLDEKDHRFQVFKDNLGFIDEHNAQNNTYKLGLNRFADLTNEEYQAMYLGTRSDAKRRFMKAKSTGHRYAYSARDRLPVHVDWRLKGAVAPIKDQGGCGSCWAFSTVAAVEAINKIVTGKLVSLSEQELVDCDRDYDEGCNGGLMDYAYEFIIANGGIDTEEDYPYLGFDSKCDPTRKNAKVVSIDGYEDVPQNDEKALKKAVAHQPVSVAIEASGRALQLYQSGVFTGRCGTNLDHGVVAVGYGTENGMDYWLVRNSWGKGWGEDGYFKLERNVVSTSTGKCGIAMQASYPVKNSQNSAIRSSVYESTGVNISSA* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1100 374 SUPERFAMILY Cysteine proteinases 39 351 IPR038765 -
Dod05g1100 374 PRINTS Papain cysteine protease (C1) family signature 310 316 IPR000668 GO:0006508|GO:0008234
Dod05g1100 374 PRINTS Papain cysteine protease (C1) family signature 295 305 IPR000668 GO:0006508|GO:0008234
Dod05g1100 374 PRINTS Papain cysteine protease (C1) family signature 153 168 IPR000668 GO:0006508|GO:0008234
Dod05g1100 374 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 310 329 IPR025661 -
Dod05g1100 374 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 27 359 - -
Dod05g1100 374 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 293 303 IPR025660 -
Dod05g1100 374 SMART Inhibitor_I29_2 46 102 IPR013201 -
Dod05g1100 374 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 153 164 IPR000169 -
Dod05g1100 374 Gene3D Cysteine proteinases 24 353 - -
Dod05g1100 374 PANTHER CYSTEINE PROTEASE 27 359 - -
Dod05g1100 374 SMART pept_c1 135 351 IPR000668 GO:0006508|GO:0008234
Dod05g1100 374 Pfam Cathepsin propeptide inhibitor domain (I29) 46 102 IPR013201 -
Dod05g1100 374 CDD Peptidase_C1A 136 350 IPR039417 -
Dod05g1100 374 Pfam Papain family cysteine protease 135 351 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1100 Dod-Chr5 30624861 30628046 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0081 06 1071225 1074468 Dod05g1100 05 30624861 30628046 ECH
Dod08g2046 08 47814637 47820052 Dod05g1100 05 30624861 30628046 ECH
Dod05g1100 05 30624861 30628046 Dod05g1100 05 30624861 30628046 ECH