Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0920 ATGCCAAATCAAAACCCCATTTACCATTGCACTCTCCTTTCGTTAATCTTGCATGTTGTACTACTCAATGCAGTTCTCCCTGCGTGTTGCAAATCCACTATTGAGCCCTGCTCCACCAATGACACATGCAACGCTCTTCTTGGCTACACACTTTACACTGACCTCAAGGTCTCTGAAGTAGCTTCCTTCTTCCAAATAGACCCCATTGCTCTTCTCACTGCCAATGCCATTGACACCTCTTACCCTGTCGTAGAGGAACACATCCTCCCTTCGCAGCTCTTCCTCAAGGTTCCCATCACATGTTCCTGTGTTGATGGAATCCGAAAATCTGTGTCCACCCATTACAGGACTCGACCCTCTGACACTCTCTTGTCCATTGCAGATTCAATATATGGGGGTCTGGTTTCTGCTGACCAGCTCGGAGAGGCTAATTCCATGGCTGACCCTTTGGTGCTTGATGAGGGTCAGAATCTTGTGGTGCCACTCCCTTGCACTTGCTTCAATGGAACTGATAACTCTTTGCCTGCTATTTACCTGTCCCATGTGGTTCAACCGGTTGATACTTTGGCCGCTGTTGCAGCTAGATACTTCACCACTGTTACTGACTTGATGAATGTTAATTCTATGGGGACCGCAGCTATCTCTGATGGTGATATTCTTGCTGTCCCAATTCCTGCTTGCGCATCAAATTTTCAAAAATATGCCTCTGATTTTGGTTTGCTTGTCCCTAATGGGAGCTATGCAATTTCAGCAAGTCACTGTGTGCAGTGTAGCTGTGGACCACAAAATCTAGATTTGTACTGCATGCCAGCTTCCTTAGCTGTCTCTTGCTCCAGCTTGCAATGTAAAAACAGCAGCCTTATGCTTGGGAATTTTACCGTGGAACATACCAGTGGTGGTTGCAATGTTACTTCTTGCAGTTATGACGGTTTTGTGAATGGCACGATATTAGCAACGCTGTCATCATCTCTTCAACCTCGTTGCCCAGGGCCACAGAAAATTCCTCCACTTATAGCCCCACCTATGTTTGTTATGCGGGAATTAGTTTTTGGCCCATCACCATTACCTCAATCAGATGGAATTGGTGTAGCAGCACCCAAATCTTTGGTGGTGCCTGCGACAGGGTTGCTTCCAGGATTCCCACCAGCAAATGGCCCCATTGGTGGCATTGCTGCCGGCACTTCTGCTGCGAGCTCATTGGTGAATCCGTCGCCCACTTTGACATCTGGACTCTTGTTATTACTTGCAAAGTTGATGATCCTCTTGGCATTTTAA 1275 0.469 MPNQNPIYHCTLLSLILHVVLLNAVLPACCKSTIEPCSTNDTCNALLGYTLYTDLKVSEVASFFQIDPIALLTANAIDTSYPVVEEHILPSQLFLKVPITCSCVDGIRKSVSTHYRTRPSDTLLSIADSIYGGLVSADQLGEANSMADPLVLDEGQNLVVPLPCTCFNGTDNSLPAIYLSHVVQPVDTLAAVAARYFTTVTDLMNVNSMGTAAISDGDILAVPIPACASNFQKYASDFGLLVPNGSYAISASHCVQCSCGPQNLDLYCMPASLAVSCSSLQCKNSSLMLGNFTVEHTSGGCNVTSCSYDGFVNGTILATLSSSLQPRCPGPQKIPPLIAPPMFVMRELVFGPSPLPQSDGIGVAAPKSLVVPATGLLPGFPPANGPIGGIAAGTSAASSLVNPSPTLTSGLLLLLAKLMILLAF* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0920 424 CDD LysM 180 222 IPR018392 -
Dod05g0920 424 Pfam LysM domain 181 220 IPR018392 -
Dod05g0920 424 Pfam LysM domain 115 161 IPR018392 -
Dod05g0920 424 SMART LysM_2 180 223 IPR018392 -
Dod05g0920 424 SMART LysM_2 114 161 IPR018392 -
Dod05g0920 424 Gene3D LysM domain 109 170 IPR036779 -
Dod05g0920 424 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 14 388 - -
Dod05g0920 424 ProSiteProfiles LysM domain profile. 113 160 IPR018392 -
Dod05g0920 424 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 14 388 - -
Dod05g0920 424 SUPERFAMILY LysM domain 179 224 IPR036779 -
Dod05g0920 424 ProSiteProfiles LysM domain profile. 179 222 IPR018392 -
Dod05g0920 424 Gene3D LysM domain 171 234 IPR036779 -
Dod05g0920 424 CDD LysM 113 160 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0920 Dod-Chr5 17291995 17295898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0920 4 400 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 66.416 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0920 - - gmx:100777292 601.282