Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3047 ATGGCATCAGGAGGACTATGTCAACCATTTACACTGTTCAGGCAGCAGGACACCCTTGCATCCATATCCCAAGGTTATGGTGGCCTTGTTAGTGCTGACCAAATTGAGAGTGTGAACAGCATCAATGAAACAAACCCTTTGACAGATGGTGAAAGCATTGTGATTCCATTGCCATGCACATGTCTGAACAATGTCAACAATGGGGGAGCTGCAATCTATATGTCATATGTGGTGCAGAAAGGGGAAAGCTTGGGAACCATAGCAGCAGTTTTTGGCATTACTGTTTCAGACTTGGAATCTGTGAATGGGCTTGGCCAAGCTGCAGTTGATCCAGGAGACATATTATCTGTTCCTATTGCAGCATGTTCATCAGCTACTCTGAATTGGTACAATGAGAGTTTGATAGTCCCAAATGGATCATATGCTTTAACTGCCACCAACTGCATCAAATGCTCTTGCGCACCAATGGATCTTAAGCTGCAATGTCTTCCTTCTGGACTGGATGTTCCCTTGCTACAATTTACGTTGCAAAGGGTCCAATCTTATTATTGGGGATGA 558 0.4409 MASGGLCQPFTLFRQQDTLASISQGYGGLVSADQIESVNSINETNPLTDGESIVIPLPCTCLNNVNNGGAAIYMSYVVQKGESLGTIAAVFGITVSDLESVNGLGQAAVDPGDILSVPIAACSSATLNWYNESLIVPNGSYALTATNCIKCSCAPMDLKLQCLPSGLDVPLLQFTLQRVQSYYWG* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3047 185 ProSiteProfiles LysM domain profile. 9 55 IPR018392 -
Dod04g3047 185 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 13 168 - -
Dod04g3047 185 Pfam LysM domain 76 118 IPR018392 -
Dod04g3047 185 Pfam LysM domain 16 56 IPR018392 -
Dod04g3047 185 SUPERFAMILY LysM domain 74 118 IPR036779 -
Dod04g3047 185 SMART LysM_2 10 56 IPR018392 -
Dod04g3047 185 SMART LysM_2 75 118 IPR018392 -
Dod04g3047 185 ProSiteProfiles LysM domain profile. 74 117 IPR018392 -
Dod04g3047 185 Gene3D LysM domain 68 128 IPR036779 -
Dod04g3047 185 Gene3D LysM domain 13 67 IPR036779 -
Dod04g3047 185 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 1 13 168 - -
Dod04g3047 185 CDD LysM 75 117 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3047 Dod-Chr4 54280871 54283685 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g3047 14 169 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 47.468 2.27e-40 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g3047 - - aprc:113855794 254.603