Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2146 ATGGCTCAAGTACAAAGTGGCCGAGAAAGTGAAGGGATTAAGCTCTTTGGGACAACGATCACGTTGCATGGTAGACAAAGAAAAGAAGATCACAAAAGGGAAAGTAGTAATAGGGAAGAAGATGTGAGAGATGATGAGGAGAAGAAGCCTAATAAGATCATACCATGCCCAAGATGCAAGAGCATGGAAACCAAGTTTTGTTACTTCAATAACTACAACGTTAATCAGCCTAGGCATTTCTGCAAGGGCTGCCAGAGGTATTGGACGGCAGGGGGGGCCCTCCGCAATGTGCCGGTGGGGGCCGGCCGCCGAAAGGCCAAGCAGCCGTGCTGCCCTGACGGTGGAGCACTCTATGAATCTTCCACCGCAGTTGAGAAGTTTGGGTTGGACGATGATGAGGCGTTGGTTTTGGATGATTTGTGGGATGTTGCCACCGTGGTCCACGGTGGTTTCCGGCACCTTTTTCCATCCAAACGGCTGAGGACGAGCTCAGCTGATCAGCATGAAGGTCAATGA 516 0.5058 MAQVQSGRESEGIKLFGTTITLHGRQRKEDHKRESSNREEDVRDDEEKKPNKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKAKQPCCPDGGALYESSTAVEKFGLDDDEALVLDDLWDVATVVHGGFRHLFPSKRLRTSSADQHEGQ* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2146 171 PANTHER CYCLIC DOF FACTOR 2 5 166 IPR045174 GO:0003700|GO:0006355
Dod04g2146 171 MobiDBLite consensus disorder prediction 23 49 - -
Dod04g2146 171 Pfam Dof domain, zinc finger 52 108 IPR003851 GO:0003677|GO:0006355
Dod04g2146 171 MobiDBLite consensus disorder prediction 1 49 - -
Dod04g2146 171 ProSitePatterns Zinc finger Dof-type signature. 56 92 IPR003851 GO:0003677|GO:0006355
Dod04g2146 171 ProSiteProfiles Zinc finger Dof-type profile. 54 108 IPR003851 GO:0003677|GO:0006355
Dod04g2146 171 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 5 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2146 Dod-Chr4 45076592 45078063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2146 8 167 C2C2-Dof Transcription Factor Family AT1G29160 55.172 1.80e-57 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dod04g2146 zf-Dof 8.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2146 - - vra:106779806 223.402