Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1910 ATGTTAGACGACGACCACAACAACAACAGTGCTAATTCTTCTGGTGCACCATCTTCTTCTGATGCCGCCTTTGCATTATCTGAAAACGGGGTGGCTAATAACAAAAGAAAAAGAAGACCAGCAGGAACACCCGATCCAGATGCTGAGGTTGTGTCTCTCTCACCTAAGACGCTGCTGGAATCAGACAGGTATGTGTGTGAGATCTGCAACCAAGGGTTTCAGAGGGACCAGAATCTGCAAATGCACAGGAGAAGGCATAAAGTTCCATGGAAACTGCTGAAGAGGGAGACACAAGGGATGAAGAAGAAGGTGTTTGTTTGCCCTGAGCCGAGTTGCTTGCACCATGACCCTTGCCATGCACTTGGTGACCTTGTTGGGATCAAGAAGCACTTCAGGAGGAAGCACAGCAATCACAAGCAGTGGGTTTGTGACAAGTGCTCCAAAGGGTACGCAGTTCAATCTGATTACAAGGCTCACATCAAGACCTGTGGCACCAGAGGCCATTCCTGTGACTGCGGCCGTGTCTTTTCCAGGGTGGAGAGTTTCATAGAACACCAAGATGCCTGCACTGTCCGGCAGCACCGGCCTGCAGAGTTACAAGCACTGCAACCTGCATGCTCTTCTCGAACAGCTTCAAGCACAAGTCCATCTAGTGAGGCCAATTTTAGCATAGGCCCATTGCAAGGACTTCCACTCCCAAAACCAGCTGATCAACAAGCTTCCTTGTTAACTTCAGATATACACAATAAGCCTACCACCTCCAATCAGAGGCATAACTTAGAACTTCAGCTACTACCCTCGTCAATAAATTCTCAAGAAAAAAGAAATCCAAAAGAAAGCCATGAGACCAGGTTGAAACTCTCAATAGGTTCATGCAGTGATCACAAAGGGAGTGAATCAGAGTGGCCAAGTTCAGAAACACATAGGAGCCCACCAACTGCAGAAAGGAATAATGTGGTGAATGATTCAACAATGGAAGTGGCAAGGTTAAAGGAGTTTGCTGGTGAGGAGCTCAAGTTGGCCATGGCAGAAAAGGCCTATGCAGAAGAGGCTAGAAGAGAAGCCAAACGCCAAATTGAGATAGCTGAGCTTGAGTTTGAGAATGCTAAGAGGATAAGGAAACAAGCACAAGCTGAGCTTGGAAAAGCTGAATCTCTGAGAAAACAAGCCATCAAGAAGATGAGTTCAACTGTTATGGAAATAACTTGTCAAAATTGCAAGCAACAGTTCCAGTCTACCACTGCTACTGCTGGACGTGGGTTTCCATCAGAAGAGACCTCCATTGTAATGAGTTATATGTCCTCAGCCAACACAGATGGGGAGGCTGAATGA 1332 0.4662 MLDDDHNNNSANSSGAPSSSDAAFALSENGVANNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQGMKKKVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRQHRPAELQALQPACSSRTASSTSPSSEANFSIGPLQGLPLPKPADQQASLLTSDIHNKPTTSNQRHNLELQLLPSSINSQEKRNPKESHETRLKLSIGSCSDHKGSESEWPSSETHRSPPTAERNNVVNDSTMEVARLKEFAGEELKLAMAEKAYAEEARREAKRQIEIAELEFENAKRIRKQAQAELGKAESLRKQAIKKMSSTVMEITCQNCKQQFQSTTATAGRGFPSEETSIVMSYMSSANTDGEAE* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1910 443 MobiDBLite consensus disorder prediction 205 236 - -
Dod04g1910 443 Gene3D Classic Zinc Finger 42 108 - -
Dod04g1910 443 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Dod04g1910 443 MobiDBLite consensus disorder prediction 293 319 - -
Dod04g1910 443 SMART c2h2final6 105 135 IPR013087 -
Dod04g1910 443 SMART c2h2final6 64 86 IPR013087 -
Dod04g1910 443 SMART c2h2final6 141 168 IPR013087 -
Dod04g1910 443 MobiDBLite consensus disorder prediction 266 319 - -
Dod04g1910 443 PANTHER OS03G0310200 PROTEIN 9 443 IPR039288 GO:0009630
Dod04g1910 443 SUPERFAMILY beta-beta-alpha zinc fingers 63 161 IPR036236 -
Dod04g1910 443 Gene3D Classic Zinc Finger 126 203 - -
Dod04g1910 443 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Dod04g1910 443 MobiDBLite consensus disorder prediction 1 51 - -
Dod04g1910 443 Coils Coil 338 393 - -
Dod04g1910 443 Pfam Zinc finger, C2H2 type 64 86 IPR013087 -
Dod04g1910 443 MobiDBLite consensus disorder prediction 1 27 - -
Dod04g1910 443 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 9 443 - -
Dod04g1910 443 MobiDBLite consensus disorder prediction 274 289 - -
Dod04g1910 443 MobiDBLite consensus disorder prediction 205 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1910 Dod-Chr4 42162803 42165129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1910 28 443 C2H2 Transcription Factor Family AT2G01940 56.532 3.17e-157 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod04g1910 zf-C2H2 0.0042 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1910 04 42162803 42165129 Dod04g1910 04 42162803 42165129 ECH