Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1862 ATGGGTGTGGGTGTGGGCAAGTCGGTCCTTTGGCTAACCAAGCTGTTCATCCTGGCCTCTTGCCTCCTGCAGCTGGGCTTGACCCAGACGCAGGCTCAGCCAGAGGCCAATTTCAAGTGCGGAACCAACGCCACGTGTCAGGCCCTGATCGACTACACGAGCCAAAACAGCACTACCCTGCGCGCCATCCAAACCCTCTTCAACGTGAAGCACCTCCCAGACATCATAGGAGCCAACAACCTCCCAACCAACACCTCCGGCAGTTACAGCGTGGCCGCCAACCAGGTCGTTAAGGTGCCGTTCCCCTGCAAGTGCCGTAACGGCACGGGGCTCTCGAAGGGCGTGCCATTGTACAAGATAAAACCGGGTGACGGCCTGGACGAGATTGCGAGGACAGTGTTCGCGGGAGTAGTGAAGTACCAGCAGATCCAGGTTGCGAATAATATCAGTGATGCGAACAACATCACCGCTGGGGATACGCTGTATATACCCTTGCCTTGTAGCTGCGATGCGGTGGGAGGGAGCAGCGTGGTCCACTATGCACACATCGTGCCCGCTGAAAGCACCGTGCAGGGGATTGCTGAGGAGTATGGTACCACGCAGCAGGTGCTTCTTGACCTTAATGGGATTACTGACCCCAAGCTCCTTCAGGCCGGTCAGGTTCTCGATGTTCCCCTCAGAGCTTGTACCTCGAACGTGAGTAAAGACTCATTGGACTACCCTTTGCTTGTTCCAAATTCCACATACGTTTACACTGCCAATGAATGCGTGAAATGCAAGTGCGACTCCGGTAACAACTACATATTGCAATGCGAGGCATCAAATCTGAAGCCAACAAGCAGGTGGCCCGTTTGCCCGTCTTTGAAATGCCAAGGGAACCTCGACCTTGGCAACGTCACGTCTGGTTCAGATACAGGTGCCTGCAATCGCACATTCTGTGCCTACGCTGGTTACAACACCCGCAATGTCTCTACAACTCTTGATACTGAGTCCTTTTGTCCTGCACCAGCACCTGCACCTGGACCGAGTGGTGGTGGTACGGTAGCACCAAGTGGTGGTGGTTCAGGAGCATCAAGGAGCACCTACAATCTGTTCATTGTCATCAACCTCATCCTCCTTTCTGTCTATCTTTTGTAG 1137 0.5418 MGVGVGKSVLWLTKLFILASCLLQLGLTQTQAQPEANFKCGTNATCQALIDYTSQNSTTLRAIQTLFNVKHLPDIIGANNLPTNTSGSYSVAANQVVKVPFPCKCRNGTGLSKGVPLYKIKPGDGLDEIARTVFAGVVKYQQIQVANNISDANNITAGDTLYIPLPCSCDAVGGSSVVHYAHIVPAESTVQGIAEEYGTTQQVLLDLNGITDPKLLQAGQVLDVPLRACTSNVSKDSLDYPLLVPNSTYVYTANECVKCKCDSGNNYILQCEASNLKPTSRWPVCPSLKCQGNLDLGNVTSGSDTGACNRTFCAYAGYNTRNVSTTLDTESFCPAPAPAPGPSGGGTVAPSGGGSGASRSTYNLFIVINLILLSVYLL* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1862 378 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 28 331 - -
Dod04g1862 378 SMART LysM_2 117 164 IPR018392 -
Dod04g1862 378 SMART LysM_2 181 225 IPR018392 -
Dod04g1862 378 Gene3D LysM domain 179 235 IPR036779 -
Dod04g1862 378 Gene3D LysM domain 117 171 IPR036779 -
Dod04g1862 378 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 28 331 - -
Dod04g1862 378 ProSiteProfiles LysM domain profile. 180 224 IPR018392 -
Dod04g1862 378 SUPERFAMILY LysM domain 180 225 IPR036779 -
Dod04g1862 378 CDD LysM 118 163 IPR018392 -
Dod04g1862 378 CDD LysM 189 224 IPR018392 -
Dod04g1862 378 Pfam LysM domain 186 225 IPR018392 -
Dod04g1862 378 Pfam LysM domain 118 164 IPR018392 -
Dod04g1862 378 SUPERFAMILY LysM domain 117 165 IPR036779 -
Dod04g1862 378 ProSiteProfiles LysM domain profile. 116 163 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1862 Dod-Chr4 41501404 41504622 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1862 13 368 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 43.454 3.57e-88 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1862 - - gmx:100804190 442.965