Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1853 ATGGCGCCGAGTGTCCGCGACCTCCAGCTAACTACCGCCGGTAAAACCGCCCTCGCCGCCGGCGACCTCGAGGATGTTCGCCTCCTCGACTCCTACGAAAGCCACGACGTTTCGCTCCATGGCGACGAAGTAGCAGCAGCGAAGCGGATTCAGGTCAGAGTCACCGGCATGACCTGCGCCGCCTGCTCCAACTCCGTCGAATCCGCTCTCATGTCCGTCGACGGCGTCGTTTCCGCCTCCGTCGCGCTCCTCCAGAACCGAGCCGACGTCGTTTTCAATCCAAGCCTCGTCAAGGATGAAGACATTAAGAATGCGATTGAAGATGCAGGTTTCGAAGCTGAGGTTTTGCCTGAACCTCAGCAGAGTGCGGTTGGAACGAAGCAAAATGCTGCTACTGTGGTAGGGCAGTTCACGATCACTGGGATGACGTGTGCGGCGTGCGTGAATTCCGTAGAAGGGATTCTGAGGGACCTCGATGGTGTGAAGAGGGCTGTGGTGGCTTTGGCTACTTCCTTAGGTGAGGTTGAGTATGATCCAAACGTGATTAGCAAAGATGAGATTGTCGGTGCTATCGAAGATGCTGGTTTTGAGGCTTCTTTTGTACAGAGCAGTGGGCAGGATAAGGTGGTGTTAAGTGTTGTTGGTGTGTACAGCTTGGTTGATGCTCAGGTTCTTGAAGGCCTGCTTGGTGGGATGAAAGGTGTGAGGCAGTTCCGTTTCGATATGGTGTTGAATGAGCTGGATATTGTGTTTGATCCCGAAGTGATCAATTCTAGATCATTGGTTGATGGGATCCAGCTCGGGAGTAGTGGGAAGTTTAGGTTGCATGTTAGGAACCCTTATGCCAGAATGGCTTCTAAAGATGGTGCTGAGAGCTCGACTATGTTTCGGCTTTTCATTTCCAGCCTGTTACTTAGTATTCCTCTCTTCTTCATGGGGGTAATTTGTCCTCATATACCATTAGTATACTCCTTATTACTTTGGAGATGTGGGCCTTTCCTCATGGGTGATTGGTTGAAGTGGGGATTGGTGAGCGTCATACAATTTGGGGTTGGAAGACGCTTCTACATTGCAGCTGGCAGAGCTCTTAGAAATGGTTCAACAAACATGGATGTCCTGGTTGCTTTGGGAACCACAGCCTCTTATGTTTATTCTGTTTGTGCTCTTCTGTATGGTGCTCTTACTGGATTTTGGTCTCCAACATACTTTGAAACAAGTGCTATGCTCATAACATTTGTATTGTTGGGCAAGTATTTGGAATGCCTTGCCAAGGGCAAAACATCTGATGCCATTAAGAAGTTAGTGGAACTTGCTCCTGCAACAGCTTTATTGGTTGTCAAAGATAAAGGTGGTAAATCTATTGAAGAAAGAGAAATAGACTCCTTACTTGTTCAACCTGGTGACACGTTAAAAGTTCTTCCTGGTACAAAGATTCCTGCTGATGGTAGTGTTACTTGGGGCTCAAGTTATGTAAATGAGAGCATGGTGACTGGTGAATCTATACCTGTTTCAAAGGAGGTCAATGCATCTGTCATTGGAGGTACAATCAATTTGCATGGTGTCCTTCACATTCAAGCTACCAGAGTAGGATCTGATACAGTATTGAGTCAGATAATTAGTTTGGTGGAGACAGCCCAGATGTCCAAAGCTCCCATTCAAAAGTTTGCTGATTATGTGGCAAGCATATTTGTTCCTACTGTTGTGGCTTTGTCATTATTGACATTCCTGTGTTGGTATATTGCTGGGGTCCTCGGAGCTTACCCACAAGAATGGCTGCCGGAAAATGGAAATAACTTTGTTTTCGCCCTTATGTTTTCAATATCTGTTGTGGTGATTGCATGCCCCTGTGCACTTGGTTTGGCAACACCAACTGCTGTCATGGTGGCAACAGGGGTTGGGGCTAACAATGGTGTCTTAATTAAAGGAGGAGATGCCTTGGAAAGGGCTCAGATGGTGAGGTATGTTGTATTTGATAAAACGGGCACTCTAACTCAAGGGAAAGCCACTGTTACTACTGTCAAGGTGTTCACAGGAATGGACCGTGGAGAATTTCTCAAATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACACCCACTGGCAAAAGCAATACTGCAATATGCGCGCCATTTTCATTTCTTTGATGATACCTCTCATACCAGTGGCACTCAGAATGATGCCAAGGAGTTAAAGTCAGGATGGCTTTATGATGTCTCAGACTTCTCTGCTCTTCCAGGAAGAGGTGTCCAGTGCTTTATAGACGGGAAGCGTATTTTGGTTGGTAACAGGAAGCTGCTGATGGAAAGTGGCATAGATATTTCTAACGAAGTGGAAAATTTTGTGGTAGAGCTCGAAGAAAATGCAAAGACAGGGATACTGGTAGCATATGATGATGTTTTAACTGGAGTGTTGGGGGTTGCAGACCCACTAAAGAGAGAAGCTTCTGTCGTTATAGAAGGCCTCCAGAAAATGGGAGTCATACCTGTTATGGTTACAGGGGATAACTGGAGAACAGCTCGAGCTGTTGCGAAGGAGGTGGGCATTCAAGATGTTAGGGCAGAGGTTATGCCTGCGGGAAAGGCAGATGTTGTTCGTTCATTTCAAAAAGATGGGAGTATAGTAGCAATGGTGGGGGATGGTATCAATGACTCTCCCGCATTAGCTGCTGCAGATGTTGGTATGGCAATTGGGGCTGGGACAGATATTGCAATAGAAGCTGCTGACTATGTGCTGATGAGAGATAATTTGGAAGATGTGATAACAGCCATTGATCTTTCCAGGAAGACCTTTTCTCGTATTCGATTGAATTATGTATTTGCGATGGCCTACAATGTTGTTGCCATACCAGTTGCCGCTGGGGTTTTATTTCCTTCACTGGGGATCAAGCTGCCACCATGGGTTGCTGGTGCATGCATGGCTCTATCATCTGTAAGTGTTGTATGTTCTTCTTTGCTTCTAAGAAGATATAGAAAACCCAGACTTACCACAATACTTGAGATAATTGTAGATTAG 3009 0.4633 MAPSVRDLQLTTAGKTALAAGDLEDVRLLDSYESHDVSLHGDEVAAAKRIQVRVTGMTCAACSNSVESALMSVDGVVSASVALLQNRADVVFNPSLVKDEDIKNAIEDAGFEAEVLPEPQQSAVGTKQNAATVVGQFTITGMTCAACVNSVEGILRDLDGVKRAVVALATSLGEVEYDPNVISKDEIVGAIEDAGFEASFVQSSGQDKVVLSVVGVYSLVDAQVLEGLLGGMKGVRQFRFDMVLNELDIVFDPEVINSRSLVDGIQLGSSGKFRLHVRNPYARMASKDGAESSTMFRLFISSLLLSIPLFFMGVICPHIPLVYSLLLWRCGPFLMGDWLKWGLVSVIQFGVGRRFYIAAGRALRNGSTNMDVLVALGTTASYVYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLVVKDKGGKSIEEREIDSLLVQPGDTLKVLPGTKIPADGSVTWGSSYVNESMVTGESIPVSKEVNASVIGGTINLHGVLHIQATRVGSDTVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVALSLLTFLCWYIAGVLGAYPQEWLPENGNNFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQMVRYVVFDKTGTLTQGKATVTTVKVFTGMDRGEFLKLVASAEASSEHPLAKAILQYARHFHFFDDTSHTSGTQNDAKELKSGWLYDVSDFSALPGRGVQCFIDGKRILVGNRKLLMESGIDISNEVENFVVELEENAKTGILVAYDDVLTGVLGVADPLKREASVVIEGLQKMGVIPVMVTGDNWRTARAVAKEVGIQDVRAEVMPAGKADVVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRDNLEDVITAIDLSRKTFSRIRLNYVFAMAYNVVAIPVAAGVLFPSLGIKLPPWVAGACMALSSVSVVCSSLLLRRYRKPRLTTILEIIVD* 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1853 1002 Gene3D - 47 118 - -
Dod04g1853 1002 CDD P-type_ATPase_Cu-like 297 972 - -
Dod04g1853 1002 Gene3D - 424 546 - -
Dod04g1853 1002 SFLD p-type atpase 638 928 IPR044492 -
Dod04g1853 1002 Pfam E1-E2 ATPase 439 635 - -
Dod04g1853 1002 SUPERFAMILY HMA, heavy metal-associated domain 48 119 IPR036163 GO:0046872
Dod04g1853 1002 CDD HMA 136 199 IPR006121 GO:0046872
Dod04g1853 1002 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 409 679 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Dod04g1853 1002 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 747 959 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Dod04g1853 1002 CDD HMA 51 114 IPR006121 GO:0046872
Dod04g1853 1002 SUPERFAMILY HMA, heavy metal-associated domain 134 203 IPR036163 GO:0046872
Dod04g1853 1002 ProSitePatterns E1-E2 ATPases phosphorylation site. 658 664 IPR018303 -
Dod04g1853 1002 SFLD C1.7: P-type atpase like 638 928 - -
Dod04g1853 1002 Gene3D - 135 200 - -
Dod04g1853 1002 PANTHER ATP7, ISOFORM B 6 995 - -
Dod04g1853 1002 ProSitePatterns Heavy-metal-associated domain. 139 168 IPR017969 GO:0046872
Dod04g1853 1002 Gene3D - 663 755 IPR023299 GO:0000166
Dod04g1853 1002 Gene3D - 756 807 IPR023299 GO:0000166
Dod04g1853 1002 ProSiteProfiles Heavy-metal-associated domain profile. 134 200 IPR006121 GO:0046872
Dod04g1853 1002 Pfam Heavy-metal-associated domain 52 112 IPR006121 GO:0046872
Dod04g1853 1002 Pfam Heavy-metal-associated domain 137 197 IPR006121 GO:0046872
Dod04g1853 1002 ProSiteProfiles Heavy-metal-associated domain profile. 49 115 IPR006121 GO:0046872
Dod04g1853 1002 SUPERFAMILY HAD-like 655 982 IPR036412 -
Dod04g1853 1002 SUPERFAMILY Calcium ATPase, transmembrane domain M 390 965 IPR023298 -
Dod04g1853 1002 Pfam haloacid dehalogenase-like hydrolase 653 890 - -
Dod04g1853 1002 ProSitePatterns Heavy-metal-associated domain. 54 84 IPR017969 GO:0046872
Dod04g1853 1002 TIGRFAM TIGR00003: copper ion binding protein 136 198 IPR006122 GO:0005507
Dod04g1853 1002 TIGRFAM TIGR00003: copper ion binding protein 50 113 IPR006122 GO:0005507
Dod04g1853 1002 PRINTS P-type cation-transporting ATPase superfamily signature 823 833 - -
Dod04g1853 1002 PRINTS P-type cation-transporting ATPase superfamily signature 876 895 - -
Dod04g1853 1002 PRINTS P-type cation-transporting ATPase superfamily signature 492 506 - -
Dod04g1853 1002 PRINTS P-type cation-transporting ATPase superfamily signature 656 670 - -
Dod04g1853 1002 PRINTS P-type cation-transporting ATPase superfamily signature 801 812 - -
Dod04g1853 1002 PRINTS P-type cation-transporting ATPase superfamily signature 899 911 - -
Dod04g1853 1002 PRINTS H+-transporting ATPase (proton pump) signature 848 864 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Dod04g1853 1002 PRINTS H+-transporting ATPase (proton pump) signature 876 892 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Dod04g1853 1002 PRINTS H+-transporting ATPase (proton pump) signature 907 932 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Dod04g1853 1002 SUPERFAMILY Calcium ATPase, transduction domain A 456 542 IPR008250 -
Dod04g1853 1002 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 370 985 IPR027256 GO:0006812|GO:0016021|GO:0019829
Dod04g1853 1002 Gene3D - 623 933 IPR023214 -
Dod04g1853 1002 PANTHER HEAVY METAL P-TYPE ATPASE 6 995 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1853 Dod-Chr4 41407919 41413839 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1853 04 41407919 41413839 Dod04g1853 04 41407919 41413839 ECH