Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1844 ATGGCCTCAAGAGGAATTAAGTATATTGATTGCTATGGAGTTGATAATGCACTGGTTCGAGTTGCTGATCCAACTTTTTTAGGTTACTTCATTGATAAAGGTGTAGCTGCTGGGGCAAAGGTTGTCCGCAAGGCATACCCACAAGAAAAGGTTGGTGTGTTTGTGCGACGAGGTAAAGGTGGACCTCTTACCGTAGTTGAATATAGCGAGTTGGATCCATCACTGGCTTCTGCAGTCAACCAAGCAACTGGCCGTCTTCGTTTTTGTTGGAGTAATGTCTGCTTACACATGTTCACCTTGGACTTTCTAAATCAAGTGGCAAATGGCCTTGAAAAAGACAGCATTTACCATCTTGCGGAAAAGAAAATCCCATCGATACATGGATATACAATGGGATTAAAACTTGAACTGTTTATATTTGATGCATTTCCATATGCTCCCACGACTGCACTTTTTGAGGTACTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAACTTTGACACTCCAGATAGTGCGAAATTGCTTGTTCTTCGACTCCATACTCGTTGGGTTGTTGCTGCAGGTGGCTTCTTGACACATTCGGTGCCTTTATATGCAACAGGTTCGGTCTTCCTCGTACCAGCTTCTCTACCTTTGCTTTCTTTGCCCACCACTTCTCAAAAACCCATCTCTCACTTCTCCACAGCTCCCTTCAAAACCCACTTGCAAGATGGCAACTTTTCATGTCCCAAAGAACAGTTTGCTACCTTATGTTCCAAAGGGTACATCAAAGAAGCTTTTTGCTGCTTCGTTTCTGAGATATGGGCAGAACCCCGCTTGTTCTCGAATCTCATCCAAGCATGCATACCCACAAAGTCTGTTTCTTTGGGGAAACAGCTTCATTCTTTGATCATAACTTCTGGGTGTTCCTCAGACAAGTTCATCTCCAATCATCTCCTCAACCTCTACTCGAAATTCGGGGATCTTCAATCTGCTGTGGCACTGTTTGATAGAATGCCGAGGAGGAACACTATGTCATGTAACATCATGATCAAGGGCTATCTCGAAATGGGTAGTTTTCAGAGTGCCGAGAAACTGTTTGATGAAATGCCTGAGAGGAATGTTGCTACTTGGAATGTGATGGTCACGGGGTTGGCTAAGTTTGAAATGAATGAGGAGTCTTTATTCTTGTTTTCAAGGATGAATGAGTTGGGTTTCATGCCAGATAAGTACTCGTTGGGTAGTGTGCTCAGGGGATGTGCACACCTCAGAGCTATGTATGCTGGGCAACAGGTTCATGCTTATGTTATGAAATGTGGGTTTGAGTTTAATTTGGTTGTTGGATGCTCATTAGCTCACATGTACATGAAAGCTGGAAGCTTGAATGATGGGGAGAGAGTTATCAAATTGATGCCATCTTGTAGTGTGGTTGCTTGGAATACACTTATGGCCGGAAAAGCTCAAAATGGGTACTTCGAGGGAGTTATGGATCAATACTGTATGATGAAAATGACAGGTTTTAGACCAGATAAGATTACTTTTGTGATCGTGATCAGTTCATGTTCAGAGTTGGCCACACTTGGTCAAGGGAAGCAAATTCATGCTGAAGCAATCAAAGTAGGAGCTTGTGCCATAGTTGACGGATGTCCCCTTGTTTACTCATGTTCACTCTGCCCAGAGTCTGCACTTTATAAAGACTTAGTGAAAGAATTTCCCATTGTTTCAATCGAGGATCCATTTGATCAAGATGATTGGGGTTCAAGGGCTTCTCTACTCTCTTCAGTCGATTTTCAACTTGCAGGAGATGATTTGTTAGTTACAAATCCAAAGAGAACAGCTGAAGCCATCCAGAAAAGGGCTTGCAATGGAGAAAGAGGAGAGAATAGTATTCTTTTTGCCAGGTTTTGA 1902 0.4285 MASRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVAAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAVNQATGRLRFCWSNVCLHMFTLDFLNQVANGLEKDSIYHLAEKKIPSIHGYTMGLKLELFIFDAFPYAPTTALFEVLREEEFAPVKNANGSNFDTPDSAKLLVLRLHTRWVVAAGGFLTHSVPLYATGSVFLVPASLPLLSLPTTSQKPISHFSTAPFKTHLQDGNFSCPKEQFATLCSKGYIKEAFCCFVSEIWAEPRLFSNLIQACIPTKSVSLGKQLHSLIITSGCSSDKFISNHLLNLYSKFGDLQSAVALFDRMPRRNTMSCNIMIKGYLEMGSFQSAEKLFDEMPERNVATWNVMVTGLAKFEMNEESLFLFSRMNELGFMPDKYSLGSVLRGCAHLRAMYAGQQVHAYVMKCGFEFNLVVGCSLAHMYMKAGSLNDGERVIKLMPSCSVVAWNTLMAGKAQNGYFEGVMDQYCMMKMTGFRPDKITFVIVISSCSELATLGQGKQIHAEAIKVGACAIVDGCPLVYSCSLCPESALYKDLVKEFPIVSIEDPFDQDDWGSRASLLSSVDFQLAGDDLLVTNPKRTAEAIQKRACNGERGENSILFARF* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1844 633 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1 199 IPR029044 -
Dod04g1844 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Dod04g1844 633 Pfam UTP--glucose-1-phosphate uridylyltransferase 1 195 IPR002618 GO:0070569
Dod04g1844 633 Gene3D - 559 628 IPR036849 -
Dod04g1844 633 Pfam PPR repeat family 473 519 IPR002885 -
Dod04g1844 633 Pfam PPR repeat family 341 373 IPR002885 -
Dod04g1844 633 Gene3D Tetratricopeptide repeat domain 424 546 IPR011990 GO:0005515
Dod04g1844 633 PANTHER OS07G0578800 PROTEIN-RELATED 231 545 IPR045215 GO:0003723|GO:0009451
Dod04g1844 633 PANTHER OS03G0816600 PROTEIN 231 545 - -
Dod04g1844 633 Pfam PPR repeat 375 404 IPR002885 -
Dod04g1844 633 Gene3D Tetratricopeptide repeat domain 253 423 IPR011990 GO:0005515
Dod04g1844 633 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 205 IPR029044 -
Dod04g1844 633 SMART Enolase_C_3 509 632 IPR020810 -
Dod04g1844 633 TIGRFAM PPR: pentatricopeptide repeat domain 344 373 IPR002885 -
Dod04g1844 633 Pfam Enolase, C-terminal TIM barrel domain 560 620 IPR020810 -
Dod04g1844 633 SUPERFAMILY Enolase C-terminal domain-like 560 620 IPR036849 -
Dod04g1844 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1844 Dod-Chr4 41346802 41356039 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1844 04 41346802 41356039 Dod04g1844 04 41346802 41356039 ECH