Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1149 ATGATGGAGGAGAGGAAGTTTGTGTGCAAGTACTGCAACAAGAGATTCCCCTGTGGGAAGTCTCTGGGTGGACACATCAGGACCCACATGACTGAAGAAAGGAACAATCCTGATAATAACAGTGATGATCATCTTAAGTTATTGGATTCTGGGAGGAAGAGGAAGAGGGATTCATGGCCTGAAGCTGGTGGTGGTGGTGGTGGCAGTGGTAGCAACAACCCCATTTATGGACTCAGAGAGAACCCCAAGAAGACAACTAGGTTTGTGCATATCGATGCCACTTTGGCACAGGAAGATGAGAGGTTCTGCAAAGAATGTGGGAAAGGCTTCCCTTCATTGAAAGCTCTCTGCGGCCACATGGCTTGTCACTCTGAGAAAGAGAAGGGAGCCAACAACAACAACAATGAGAATCAGAAATTGGTTATGGATAGTCAATCTGACACTGAGAGTTATGATGCTCCAACACATCTAAGGAGATCCAAGAGGATGAGATTCAAGACCCTTAGCCTTAGCAACCAACCCTCATCTTCTTCTGCTCCTTTGCCAAATGGTTCTTCTTCTGTGTCTGAGGTGGAGCAGGAGCAAGAAGAGGTGGCTAAGTTGTTGATGATGCTGTCCAGAGATTCTAGCCATAAGGGTCGTTTTGCTTCTGTTGCAGAGTCTTCTGATAACAATTCGGTTGTTCTAGAGGAAGCAAAATCATCTTCTCCTGAAACAAGGGTTGCGATGAGTAATCACAAAAGCAACTTTGTGTCCAATGCTTATGGGACTGTGGAGAAGAAGCTGGTCAAGGACATCAACTTCAAACGTGCTGATAATTCGGATTCTGGTTATGTCAGATATGGTCTCAAGACCAAAATGGTGGACTCTGATGTTCCAAATTATGAATTTAAGGGTTGGAATGTGAGAGACAGGTCTGGCTTTGAGGACTATGATGTCGAATCGAGGAAGGTGCTGAGTAAAGGCAGAAGCAAATACACTGAAGCTGCAGTTAAGAATTTGGATTATGATAGAACAGATGGAACTGCAAGGAAGTTTGATTTCAGAAAGAGAGCTAACTATGATTCTCTTGGTCACAATTTAGCTGGGGTTTCTAGCAAGACAGCAAACGGTTTTACCAATGATGAAATCTATGAGAATGGAAGAAAAGCATGGAAGTATGAGAGCTTGGCCAGTGAATACGATGGCTCTTATGATTCAACAGGCGATGAAAGTGACCGAAAACAGCACCGATACTGA 1239 0.4407 MMEERKFVCKYCNKRFPCGKSLGGHIRTHMTEERNNPDNNSDDHLKLLDSGRKRKRDSWPEAGGGGGGSGSNNPIYGLRENPKKTTRFVHIDATLAQEDERFCKECGKGFPSLKALCGHMACHSEKEKGANNNNNENQKLVMDSQSDTESYDAPTHLRRSKRMRFKTLSLSNQPSSSSAPLPNGSSSVSEVEQEQEEVAKLLMMLSRDSSHKGRFASVAESSDNNSVVLEEAKSSSPETRVAMSNHKSNFVSNAYGTVEKKLVKDINFKRADNSDSGYVRYGLKTKMVDSDVPNYEFKGWNVRDRSGFEDYDVESRKVLSKGRSKYTEAAVKNLDYDRTDGTARKFDFRKRANYDSLGHNLAGVSSKTANGFTNDEIYENGRKAWKYESLASEYDGSYDSTGDESDRKQHRY* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1149 412 Gene3D Classic Zinc Finger 1 61 - -
Dod04g1149 412 Gene3D Classic Zinc Finger 85 159 - -
Dod04g1149 412 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 398 - -
Dod04g1149 412 Pfam C2H2-type zinc finger 7 31 - -
Dod04g1149 412 Pfam C2H2-type zinc finger 103 125 - -
Dod04g1149 412 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Dod04g1149 412 SMART c2h2final6 101 123 IPR013087 -
Dod04g1149 412 SMART c2h2final6 7 29 IPR013087 -
Dod04g1149 412 MobiDBLite consensus disorder prediction 30 60 - -
Dod04g1149 412 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Dod04g1149 412 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Dod04g1149 412 SUPERFAMILY beta-beta-alpha zinc fingers 5 123 IPR036236 -
Dod04g1149 412 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Dod04g1149 412 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 398 - -
Dod04g1149 412 MobiDBLite consensus disorder prediction 169 192 - -
Dod04g1149 412 MobiDBLite consensus disorder prediction 142 161 - -
Dod04g1149 412 MobiDBLite consensus disorder prediction 30 81 - -
Dod04g1149 412 MobiDBLite consensus disorder prediction 169 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1149 Dod-Chr4 32126101 32128238 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod04g1149 zf-C2H2_6 2.9e-07 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1149 04 32126101 32128238 Dod04g1149 04 32126101 32128238 ECH