Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1103 ATGTCGGAAGTTAAAGACCCGGCGATAAAGCTGTTTGGGATGACGATTTCGCTGCCACTGATTCCCAATGACTCTTCAGCGCCTGCTCCTCCTTCATCTTCCTCTTCTCCTCGTGAAGTTGAAGTTAGCTCTGCATCACAACCAGAGGCAGAGGCAGAGGAACCATCAACCAAAGAAGTTACCTCAGTACAAGATAATGATGCCTCACTTCAAATCACACAGGATTTAAAATCTCCCACTGCATCTTCAGGTATATTTGAGAATCCTAAGACTCCTTCAGCTGAAAGAGAGACTTCATTACTGAAATCCTCCACAAATGGAGAACAAAGTGAGACTAGCGTTTCTCAAGAAAAAACTCCAAAGAAACCCGACAAGATACTTCCGTGCCCACGATGCAATAGCATGGACACCAAATTCTGTTATTACAACAATTACAATGTCAATCAGCCCCGCCATTTCTGCAAGAATTGTCAGAGATACTGGACTGCTGGAGGAACGATGAGAAATGTGCCTGTAGGTGCTGGCCGCCGCAAGAACAAAAACTCTGCCGCCTCACATTATCGCCACATAATGGTTCCGGAGGCGCTTCAAGCTGCAGCTAGCCTCAATGCCCCCAATGGACTACATAATGCTGTTTTGGGAAATGCAGCAGCAGCTGTGTTGACATTTGGCCCAGATTCTCCCCTTTGCGATTCCATGTCTTCTGTATTGAACATTGCTGACAAAGCACCAAATGGTGTTCTAAATGGGTTCCATGCACCTGAGGCAAGCGCTTTTGTTTCCCATAGTAGGGAGGATGATGGGAATGATCACTCAATTGGTGTTTCTGCCACGACTTCAACTTCAACTTCATCACATGATAAAAGGGTTGAAGGTTTCCCTCCTCAGATGACATACTTCCCAAGTTCACCTTGGCCTTATCCGTGGAATTCTGCAGTTTCTCCACCTGCATTTTGCCCACCAGGATATCCTATGTCATTCTACACCACACCTTCATATTGGGGTTGCATGGGACCCTCATGGAATGTGCCATGTATCTCACCCCAATCTTCTGTTAACCGTTCTGTTTCTGCCACTAGTTCTGGCCCCAATTCACCTTTGGGGAAACACTCAAGGGATGGTAACATCATCACACAAGCCAACTCACAGAAAGAAAAGCCTGACCACAACAACTCAGAAAGCAATGATGTCTTGATCCCCAAGACACTTAGAATTGATGACCCTAGTGAAGCTGCAAAGAGTTCCATATGGTCAACACTAGGGATCAAGAATGACAAGGCCAATTCTCTCAATGGAGGAGGCCTTTTCAAGGCATTCCCATCCAAGGGGAATGATAAGAATCACACTGTGGAAGCGTCACCCGTGCTGCACGCCAACCCGGCGGCTTTGTCGCGGTCTCTTACCTTCCATGAGCGCACCTAG 1422 0.4684 MSEVKDPAIKLFGMTISLPLIPNDSSAPAPPSSSSSPREVEVSSASQPEAEAEEPSTKEVTSVQDNDASLQITQDLKSPTASSGIFENPKTPSAERETSLLKSSTNGEQSETSVSQEKTPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSAASHYRHIMVPEALQAAASLNAPNGLHNAVLGNAAAAVLTFGPDSPLCDSMSSVLNIADKAPNGVLNGFHAPEASAFVSHSREDDGNDHSIGVSATTSTSTSSHDKRVEGFPPQMTYFPSSPWPYPWNSAVSPPAFCPPGYPMSFYTTPSYWGCMGPSWNVPCISPQSSVNRSVSATSSGPNSPLGKHSRDGNIITQANSQKEKPDHNNSESNDVLIPKTLRIDDPSEAAKSSIWSTLGIKNDKANSLNGGGLFKAFPSKGNDKNHTVEASPVLHANPAALSRSLTFHERT* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1103 473 MobiDBLite consensus disorder prediction 19 43 - -
Dod04g1103 473 MobiDBLite consensus disorder prediction 352 402 - -
Dod04g1103 473 MobiDBLite consensus disorder prediction 19 125 - -
Dod04g1103 473 MobiDBLite consensus disorder prediction 61 114 - -
Dod04g1103 473 MobiDBLite consensus disorder prediction 352 385 - -
Dod04g1103 473 Pfam Dof domain, zinc finger 124 181 IPR003851 GO:0003677|GO:0006355
Dod04g1103 473 ProSitePatterns Zinc finger Dof-type signature. 129 165 IPR003851 GO:0003677|GO:0006355
Dod04g1103 473 PANTHER CYCLIC DOF FACTOR 2 1 473 IPR045174 GO:0003700|GO:0006355
Dod04g1103 473 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 473 - -
Dod04g1103 473 MobiDBLite consensus disorder prediction 262 290 - -
Dod04g1103 473 MobiDBLite consensus disorder prediction 272 289 - -
Dod04g1103 473 ProSiteProfiles Zinc finger Dof-type profile. 127 181 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1103 Dod-Chr4 31459697 31464121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1103 1 472 C2C2-Dof Transcription Factor Family AT3G47500 42.285 3.12e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dod04g1103 zf-Dof 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1103 - - gmx:100813315 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1103 04 31459697 31464121 Dod04g1103 04 31459697 31464121 ECH
Dod04g1103 04 31459697 31464121 Dod05g1747 05 42888294 42891574 ECH
Dod04g1103 04 31459697 31464121 Dod05g1747 05 42888294 42891574 PCT