Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0252 ATGAGAAGACCTTGTTGTGAGAAGGAAGGCACCAACAAAGGTGCTTGGTCCAAGCAAGAAGACCAAAAGCTCATTGATTACATCCGAGTTCATGGTGAAGGCTGTTGGCGTTCCATTCCCAAGGCTGCAGGGCTGCATCGTTGTGGCAAAAGCTGTAGGTTGAGATGGATAAACTATTTACGACCGGACATTATACGCGGCAACTTTTCCGAAGATGAAGAAGAGCTCATCATCAAACTCCATGCCCTCCTTGGCAACCGGTGGTCACTCATAGCTGGAAGGCTGCCGGGGCGCACAGACAATGAAGTGAAGAACTATTGGAATTCTCACATCCGAAGAAAGCTAATAAAGATGGGAATTGACCCAAACAACCACAAGCTGCATCAAGGCTTTCCCCTTGCTCATCAAGCTTCTGCCGCCGCCAGTGAAGAACCATCATCTGGGTCCATCAGCGAACAGCAAACAGTCCATCCTCTCATCAAACCCTCTGGTGCCGGGGGTGATGATCGGGTTTCGGACACTCAGAGCTGTCCTAATTTGGAACAAACTGCAGTAACAGCCAATGGTGGCTGCTGCTTCTTCTTCTTCATCCCGGTTGAATCTTGA 606 0.4934 MRRPCCEKEGTNKGAWSKQEDQKLIDYIRVHGEGCWRSIPKAAGLHRCGKSCRLRWINYLRPDIIRGNFSEDEEELIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKLHQGFPLAHQASAAASEEPSSGSISEQQTVHPLIKPSGAGGDDRVSDTQSCPNLEQTAVTANGGCCFFFFIPVES* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0252 201 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Dod04g0252 201 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Dod04g0252 201 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Dod04g0252 201 MobiDBLite consensus disorder prediction 135 175 - -
Dod04g0252 201 SMART sant 65 113 IPR001005 -
Dod04g0252 201 SMART sant 12 62 IPR001005 -
Dod04g0252 201 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Dod04g0252 201 CDD SANT 68 111 IPR001005 -
Dod04g0252 201 CDD SANT 15 60 IPR001005 -
Dod04g0252 201 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 185 - -
Dod04g0252 201 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Dod04g0252 201 Gene3D - 68 131 - -
Dod04g0252 201 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Dod04g0252 201 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Dod04g0252 201 PANTHER MYB TRANSCRIPTION FACTOR 2 185 - -
Dod04g0252 201 Gene3D - 13 65 - -
Dod04g0252 201 MobiDBLite consensus disorder prediction 140 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0252 Dod-Chr4 3086092 3087837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0252 2 161 MYB Transcription Factor Family AT4G38620 65.000 5.44e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod04g0252 Myb_DNA-binding 3e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0252 04 3086092 3087837 Dod04g0252 04 3086092 3087837 ECH