Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0223 ATGGCGACTGATGAGTTTAATAAACTTCGTTCACTTCCTCCATATCCTGAGATGATTTTGAGGGCGATTGATGCACTCAACGAAGAGAACGGTTCGAACAAAACGACAATATCAAAGTACATAGAATCAACGTACGGTGGGTTGCCTCAGGGACACAAGGCACTGCTCAATGTGCACCTTGCGAAGATGAGGGACAGTGGGCAGCTAGTGTTTTGGAAGAACAACTACACCATTCGTGACCCCAATGCGCCGCCGCGCCGTGGCCGTGGCCGTCCTCCCAAGGCCAAGGACCCCCTGGCTCCGGGAGCTGTCTTCTCACCGCCCAGGCCAAGGGGCCGGCCCCCTAAGGACCCAAATGAGCCGCCAAGGCCGCCTAAGGCCAAGGCTTCGGGTGGTGGGAGTAGCAGGACCAGAGGCCGGCCGAGGAAGATGGCCCGGCCCACTGGGGGCCTTGACGGATCCCCACCGCCCGCAACCAGTGGGAGGTCTAGAGGTAGGCCTCCTAAGACGAGGGAGATTAGTGTTGAGACATAA 534 0.5787 MATDEFNKLRSLPPYPEMILRAIDALNEENGSNKTTISKYIESTYGGLPQGHKALLNVHLAKMRDSGQLVFWKNNYTIRDPNAPPRRGRGRPPKAKDPLAPGAVFSPPRPRGRPPKDPNEPPRPPKAKASGGGSSRTRGRPRKMARPTGGLDGSPPPATSGRSRGRPPKTREISVET* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0223 177 MobiDBLite consensus disorder prediction 77 177 - -
Dod04g0223 177 SMART AT_hook_2 161 173 IPR017956 GO:0003677
Dod04g0223 177 SMART AT_hook_2 135 147 IPR017956 GO:0003677
Dod04g0223 177 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Dod04g0223 177 SMART AT_hook_2 108 120 IPR017956 GO:0003677
Dod04g0223 177 PANTHER HMG-Y-RELATED PROTEIN A 1 172 IPR031059 GO:0003677|GO:0005634
Dod04g0223 177 SMART h15plus2 9 75 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod04g0223 177 Pfam linker histone H1 and H5 family 13 73 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod04g0223 177 PRINTS AT-hook-like domain signature 133 143 IPR017956 GO:0003677
Dod04g0223 177 PRINTS AT-hook-like domain signature 106 117 IPR017956 GO:0003677
Dod04g0223 177 PRINTS AT-hook-like domain signature 86 96 IPR017956 GO:0003677
Dod04g0223 177 Pfam AT hook motif 87 97 IPR017956 GO:0003677
Dod04g0223 177 Pfam AT hook motif 108 119 IPR017956 GO:0003677
Dod04g0223 177 Pfam AT hook motif 161 171 IPR017956 GO:0003677
Dod04g0223 177 Pfam AT hook motif 136 145 IPR017956 GO:0003677
Dod04g0223 177 Gene3D - 8 87 IPR036388 -
Dod04g0223 177 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod04g0223 177 PANTHER HISTONE H1 1 172 - -
Dod04g0223 177 SUPERFAMILY "Winged helix" DNA-binding domain 11 82 IPR036390 -
Dod04g0223 177 PRINTS High mobility group protein (HMGY) signature 84 96 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Dod04g0223 177 PRINTS High mobility group protein (HMGY) signature 110 121 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Dod04g0223 177 PRINTS High mobility group protein (HMGY) signature 99 110 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Dod04g0223 177 PRINTS High mobility group protein (HMGY) signature 124 143 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0223 Dod-Chr4 2779531 2781018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0223 18 90 Single Myb Histone (SMH) Gene Family AT1G49950 41.026 2.68e-06 44.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0223 04 2779531 2781018 Dod04g0223 04 2779531 2781018 ECH
Dod08g0827 08 9827109 9828984 Dod04g0223 04 2779531 2781018 PCT