Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0147 ATGATGCCACATGGCGGTGACACTCCTTCAAAGCCTGCAACAACAGCCACTACAAAGGATCATGAGAATCAAAGTTCCGATGGAAGGAGAATCACCACCACAAAGCCACCAGAACAAGGCCTAAAGTGTCCACGGTGTGACTCACCAAACACAAAATTCTGCTACTACAACAACTACAGCCTAACACAACCAAGGCATTTCTGCAAGACTTGCAGAAGGTACTGGACAAAAGGTGGAGCCTTGAGAAACGTTCCAATAGGTGGTGGATGCAGGAAGAGCAAGAAAGGGATCAAGCCATCATCTTCATCATCATCATCATTATCATCAAGGTCACTCTCATGTGACTCTGGTGGATCCTCTTCAGATCAACTAAGCAGCCTCAAGTTCCTCCATGGCCTTTCAACTCCCTTGGACTTTCACCTTGGAGGGTTAACTTTCCCTTCTAGTTCAAGGCTTCAACAGCAACAACATCACCTTCCAATAGCCACTGGTTTCTATAATAACCAGTTCTCTTCTTCTTTTGGGGACCTTTCAGCCTCTTCTTCTGCTACAAGTAGTGTTTCTGGTTTCCAACTACTTGACCCTTCTTCTGCAGGTGGGTCAAGCTCTCTGATTGGCCTAAACTACCCGTTTTCTTCTTCAACTGGAAGTGGGTTATTCAGTGGCGGTGGTGCAATCCAAGGTGTGAATATGAATGTGAACTCCCTGAATGTTCACAGTAGCCTTGCTTCTTCAATTGAGTCATTGAGTTCTTTGAACCAGGATTTGCACTGGAAGCTGCAGCAGCAAAGGCTAGCAATGCTGTTTGGTGGAGAGAACCAGAAAGATGATAACAACAACAATAACAGTGTTTCTTTTTCACCGGTTGTTAACCTTGAGAACCAAACAACACTGCAGAGGCCACAACCCATACTGTTTCAGAACCTTGAGATTTCAAAGCCATCAGCTGCAGAAAGTGGTTTCCCAGTTGGTGATTCTTCTTCCTCCAGAAAAGAAGGGATAAATGGGGGTGACACTGACACCACACCAACTGAATGGTTCTTTGGGAATTCTTATGCATCAGTGGCTCCTACGCCTACTAGTACCAGCAGTGGTGGTGGTGGCAATAATGGCCATGACAATAATGCACGCAACAACTGGGGTGGTGGCAGTGGTGTCCATGCTTGGGGTGATGTGCAGCAGCAACCATACACTGCTTTGCCCTAG 1206 0.4627 MMPHGGDTPSKPATTATTKDHENQSSDGRRITTTKPPEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKKGIKPSSSSSSSLSSRSLSCDSGGSSSDQLSSLKFLHGLSTPLDFHLGGLTFPSSSRLQQQQHHLPIATGFYNNQFSSSFGDLSASSSATSSVSGFQLLDPSSAGGSSSLIGLNYPFSSSTGSGLFSGGGAIQGVNMNVNSLNVHSSLASSIESLSSLNQDLHWKLQQQRLAMLFGGENQKDDNNNNNSVSFSPVVNLENQTTLQRPQPILFQNLEISKPSAAESGFPVGDSSSSRKEGINGGDTDTTPTEWFFGNSYASVAPTPTSTSSGGGGNNGHDNNARNNWGGGSGVHAWGDVQQQPYTALP* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0147 401 MobiDBLite consensus disorder prediction 321 381 - -
Dod04g0147 401 Pfam Dof domain, zinc finger 39 95 IPR003851 GO:0003677|GO:0006355
Dod04g0147 401 ProSitePatterns Zinc finger Dof-type signature. 43 79 IPR003851 GO:0003677|GO:0006355
Dod04g0147 401 MobiDBLite consensus disorder prediction 86 114 - -
Dod04g0147 401 MobiDBLite consensus disorder prediction 1 42 - -
Dod04g0147 401 ProSiteProfiles Zinc finger Dof-type profile. 41 95 IPR003851 GO:0003677|GO:0006355
Dod04g0147 401 MobiDBLite consensus disorder prediction 96 114 - -
Dod04g0147 401 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 24 401 IPR045174 GO:0003700|GO:0006355
Dod04g0147 401 MobiDBLite consensus disorder prediction 316 401 - -
Dod04g0147 401 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 24 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0147 Dod-Chr4 1608589 1610431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0147 33 401 C2C2-Dof Transcription Factor Family AT5G65590 39.362 4.71e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dod04g0147 zf-Dof 2.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0147 - - vun:114173233 343.969