Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1855 ATGGCGAAAACGAGGCCAGGCGCAAAGGAGTTGGTCTACTACGGCATCAAAGGCACCAACAAGCTCGTTAGAGCTGGTGATTGTGTTCTGATGCGGCCCTCGGACTCCAGGAAGCGACCGTACGTGGCGCGCGTGGAGAAGGTGGAGCAGGACAAGAGGAAAAACGTTAAGGTCCGGGTGAGGTGGTACTACAGGCCCGAGGAGTCGATTGGGGGCCGCAGGAAGTTCCATGGAGCCAAGGAGCTGTTCCTGTCTGACCACTATGATGTCCAGAGTGCTGAAACCATTGAAGGCAAGTGTGTTGTGCACTCCTTCAAGAACTACACTAAGCTTGAGGATGTTGGTGATCGGGATTACTATTGTAGATTTGAGTACAAGGCTACCACTGGGGATTTCATTCCTGATCGAATTGCTGTGTTTTGCAAATGTGAGATGCCGTATAACCCGGATGACCTCATGGTACAATGTGAGGGGTGCAAGGATTGGTACCATCCTGCTTGCGTGGGCATGACTACTGAAGAAGCAAAGATACTAGACCATTTTGTATGTTCCGAATGCTCCTCTGATGATGATATGAAGAAACTGAAAGCTACATGCTCTGCATCACCAGGAGCTGATGATAAGGTGGAACCCAATTGA 639 0.5008 MAKTRPGAKELVYYGIKGTNKLVRAGDCVLMRPSDSRKRPYVARVEKVEQDKRKNVKVRVRWYYRPEESIGGRRKFHGAKELFLSDHYDVQSAETIEGKCVVHSFKNYTKLEDVGDRDYYCRFEYKATTGDFIPDRIAVFCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTTEEAKILDHFVCSECSSDDDMKKLKATCSASPGADDKVEPN* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1855 212 SMART BAH_4 21 136 IPR001025 GO:0003682
Dod03g1855 212 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Dod03g1855 212 PANTHER BNAC03G64850D PROTEIN 3 210 IPR045205 GO:0006325|GO:0035064
Dod03g1855 212 Gene3D - 1 132 IPR043151 -
Dod03g1855 212 SMART PHD_3 140 187 IPR001965 -
Dod03g1855 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 203 IPR013083 -
Dod03g1855 212 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Dod03g1855 212 PANTHER OS08G0421900 PROTEIN 3 210 - -
Dod03g1855 212 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Dod03g1855 212 Pfam BAH domain 23 135 IPR001025 GO:0003682
Dod03g1855 212 SUPERFAMILY FYVE/PHD zinc finger 129 193 IPR011011 -
Dod03g1855 212 Pfam PHD-finger 140 188 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1855 Dod-Chr3 35997459 36001331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1855 41 132 Core DNA Replication Machinery Family AT4G14700 31.183 6.17e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod03g1855 BAH 5.6e-23 No_clan